Thermobifida halotolerans: NI17_023850
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Entry
NI17_023850 CDS
T08032
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
thao
Thermobifida halotolerans
Pathway
thao03030
DNA replication
thao03410
Base excision repair
thao03420
Nucleotide excision repair
thao03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
thao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NI17_023850 (ligA)
03410 Base excision repair
NI17_023850 (ligA)
03420 Nucleotide excision repair
NI17_023850 (ligA)
03430 Mismatch repair
NI17_023850 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thao03032
]
NI17_023850 (ligA)
03400 DNA repair and recombination proteins [BR:
thao03400
]
NI17_023850 (ligA)
Enzymes [BR:
thao01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NI17_023850 (ligA)
DNA replication proteins [BR:
thao03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NI17_023850 (ligA)
DNA repair and recombination proteins [BR:
thao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NI17_023850 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NI17_023850 (ligA)
MMR (mismatch excision repair)
DNA ligase
NI17_023850 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NI17_023850 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
HHH_3
Auto_anti-p27
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
UOE19682
UniProt:
A0A399G265
LinkDB
All DBs
Position
5424006..5426201
Genome browser
AA seq
731 aa
AA seq
DB search
MSAPDPTFADDVPADVRELHARLSQDLDDHSYRYYLGSPVISDAEYDRLMLQLRELEARY
PSLVTPDSPTQKVGAPISNEFAPVEHLERMQSLDNAFDEEQLTAWAQRVGAEVPVEAFLC
ELKIDGLAVDLVYEKGRLVRAATRGDGRVGEDITLNVRTIDAVPVRLDESRHPAPELLEV
RGEVFLPGEAFEELNARLADEGKPPFANPRNAAAGSLRQKDPRVTASRPLSMLVHGVGAH
RGVTITRQSQSYELLAAWGLPVSDRTRVLSDLDGVRDYIAHYAEHRHDPAYEIDGVVVKV
DDVSLQRRLGSTSRAPRWAIAYKYPPEEVTTRLVDIRVSVGRTGRVTPYAVLEPVRVAGS
EVEFATLHNSQEVARKGVLIGDTVVVRKAGDVIPEIVGPVVDKRTGDERPFVMPAECPEC
GTPLGQQKEGDVDLRCPNTRYCKGQLRERLAFIAGRKALDIEALGYVAATALTQPLEPAE
PPLRDEGDLFDLTVEQLLPIRTLVLDPDTAEPKIDPKTGEPKVVTFFANQKGEPKKTVEK
LLEQLEAAKQRPLWRVLVALSIRHVGPRAAEDLARHFRSMDAIARADEEELVAVDGIGPT
IARSIIDWFAVDWHREIVEKWRAAGVRMAEEGADDGPRLLDGVTVVVTGSLEGYSRDGAK
EAVQELGGKVTGSVSKKTDFVVVGANPGTKYDKAVKLGVPILDEEGFEVLLTRGPEPARK
ARLVPEGSDGA
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgcaccagacccgaccttcgccgacgacgtccccgccgacgtgcgggaactccac
gcgcggctgagtcaggacctcgacgaccacagctaccgctactacctcggctcgccggtc
atctccgacgccgagtacgaccggctcatgctccagcttcgggaactggaggcccggtac
ccgtcgctggtcaccccggactcgcccacccagaaggtcggcgcgcccatcagcaacgag
ttcgccccggtcgagcacctggagcggatgcagagcctggacaacgcgttcgacgaggag
cagttgacggcgtgggcgcagcgggtcggcgccgaggttccggtcgaggcgttcctgtgc
gaactcaagatcgacggcctggccgtggacctggtgtacgagaaggggcgcctggtgcgc
gccgccacccggggggacggccgggtcggcgaggacatcaccctcaacgtccgcaccatc
gacgccgtcccggtccgcctggacgagtcccggcaccccgcgcccgaactgctggaggtg
cgcggcgaggtgttcctgcccggcgaggccttcgaggagctcaacgcccggctcgccgac
gagggcaagcccccgttcgccaatccccgcaacgccgcggccggatcgctgcggcagaag
gacccccgcgtcaccgcgtcccggccgctgagcatgctcgtgcacggcgtcggcgcgcac
cgcggggtcaccatcacccgccagtcgcagtcctacgagctgctggccgcgtgggggctg
ccggtcagcgaccgcaccagggtgctgtccgacctcgacggggtccgcgactacatcgcc
cactacgccgaacaccgccacgaccccgcctacgagatcgacggcgtcgtggtcaaggtc
gacgacgtctcgctgcagcgccgcctgggctccaccagtcgcgccccgcgctgggcgatc
gcctacaagtatccgcccgaggaggtcaccaccagactggtcgacatcagggtcagcgtg
ggccgcaccggccgggtcactccgtacgcggtgctggagccggtgcgggtcgccggatcc
gaggtcgagttcgccaccctgcacaactcccaggaggtcgcgcgcaagggcgtgctgatc
ggcgacaccgtggtggtgcgcaaggccggggacgtcatccccgagatcgtggggccggtg
gtggacaagcgcaccggggacgaacggcccttcgtgatgcccgccgagtgcccggagtgc
ggcaccccgctgggccagcagaaggagggcgacgtcgacctgcgctgccccaacacccgc
tactgcaaggggcagttgcgcgaacgcctggccttcatcgccggccgcaaggccctcgac
atcgaggccctgggctacgtggcggccaccgccctgacccagccgctggagccggccgag
ccgccgctgcgcgacgagggcgacctgttcgacctcaccgtcgagcaactgctgcccatc
cggaccctcgtcctcgaccccgacaccgccgaacccaagatcgaccccaagaccggcgag
cccaaggtggtgaccttcttcgccaaccagaagggcgagccgaagaagaccgtcgagaag
ctgctcgagcagctcgaagcggccaagcagcgtccgctgtggcgggtgctggtcgcgttg
tccatccggcacgtgggaccgcgcgcggccgaggacctcgcccggcacttccgctccatg
gacgcgatcgcccgggccgacgaggaggaactcgtcgcggtcgacgggatcgggccgacc
atcgcgcgctccatcatcgactggttcgcggtcgactggcaccgcgagatcgtcgagaag
tggcgggcggccggggtccgcatggccgaggagggggccgacgacggcccccgcctgctg
gacggggtcaccgtggtcgtcaccggttcgctggagggctacagccgggacggcgccaag
gaggccgttcaggaactcggcggcaaggtcaccgggtcggtctccaagaagaccgacttc
gtggtggtcggcgcgaacccgggcaccaagtacgacaaggccgtcaaactcggtgtgccg
atcctcgacgaggagggcttcgaggtgctgctcacccggggaccggaaccggccaggaaa
gcacggctggttcccgagggctccgacggggcctga
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