Pukyongiella litopenaei: C6Y53_16685
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Entry
C6Y53_16685 CDS
T05357
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
thas
Pukyongiella litopenaei
Pathway
thas03030
DNA replication
thas03410
Base excision repair
thas03420
Nucleotide excision repair
thas03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
thas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C6Y53_16685 (ligA)
03410 Base excision repair
C6Y53_16685 (ligA)
03420 Nucleotide excision repair
C6Y53_16685 (ligA)
03430 Mismatch repair
C6Y53_16685 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thas03032
]
C6Y53_16685 (ligA)
03400 DNA repair and recombination proteins [BR:
thas03400
]
C6Y53_16685 (ligA)
Enzymes [BR:
thas01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
C6Y53_16685 (ligA)
DNA replication proteins [BR:
thas03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
C6Y53_16685 (ligA)
DNA repair and recombination proteins [BR:
thas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
C6Y53_16685 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C6Y53_16685 (ligA)
MMR (mismatch excision repair)
DNA ligase
C6Y53_16685 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C6Y53_16685 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
HHH
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
AVO39854
UniProt:
A0A2S0MVD1
LinkDB
All DBs
Position
3432468..3434588
Genome browser
AA seq
706 aa
AA seq
DB search
MTGATAIEDLTEAQAREELARLADELGRANTAYHRDDAPEITDADYDALKRRNAAIEARF
PALKRADSPSDQVGARPGEGFAKIEHAVRMMSLGNAFDDEDVTGFDTGIRKYLGLAADAA
LAYTAEPKIDGLSLSLRYEAGILMQAATRGDGAIGENVTENARTIGDIPDRIAAAPEILE
VRGEVYMSHADFATLNERQAGAGAKTFANPRNAAAGSLRQLDPAITKDRPLRFFAYGWGV
LSEPLAGTQFAAIERLAAMGFATNPLTVLCAGPGDMLAQYREIETQRATLGYDIDGVVYK
VDDLALQARLGVRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVGG
VVVSNATLHNEDYIAGRDASGNAIRDGKDIRVGDWVQVYRAGDVIPKLADVDLAKRPADA
APYVFPDICPECGSAAIREQGDAVRRCSGGMICPAQAVEKLKHFVSRKAFDIDGLGSKQV
EQFHSDGWIAEPADIFTLRDRYGSGLQQLKNRDGWGEKSAENLFRAIDEKRSIPLGRLIF
ALGIRHVGEAASNLLATHYGSWYAFERAMGEAEAQEGAAWEDLTAIDGVGAVMAGSLVTA
FAQDGERASIDRLVAHLDVEDAARPDTDGSPVAGLTVVFTGTLEMMTRAEAKARAEALGA
RVSGSVSARTDIVIAGPGAGSKARKAAELGIRTLDEDGWLDLIGAR
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
gtgaccggggcaacagcgatagaagacctgaccgaggcgcaggcgcgcgaggaactggcg
cgccttgccgatgaactgggccgagccaataccgcgtatcatcgcgacgatgcgcccgag
atcacggatgcggactatgacgcgttgaagcggcgcaacgccgcgatcgaggcgcggttt
ccggccctgaaacgcgccgacagccccagtgaccaggtcggcgccaggcccggcgagggc
tttgccaagatcgaacatgccgtgcgcatgatgtcgctgggcaatgcgttcgacgacgag
gacgtgaccgggttcgacaccggtatccgcaaatatctgggcctggccgcggatgccgcg
ctggcctataccgccgagcccaagatcgacgggctgtccctgtcgctgagatacgaggcc
ggcatcctgatgcaggcggcgacccgcggcgatggcgcgatcggcgaaaatgtcaccgag
aacgcgcgcaccatcggcgatatcccggaccggatcgccgccgcgcccgagatcctcgag
gtgcgcggcgaggtctatatgagccatgccgatttcgccacgctcaacgaacgccaggcc
ggggcgggggccaagacctttgccaatccgcgcaatgccgccgccgggtcgttgcggcag
cttgatcccgcgatcacgaaagatcggccgcttcggttctttgcctatggctggggcgtg
ctgtcggaaccgctggccgggacgcagttcgcggctatcgaacggctcgccgcgatgggg
tttgccaccaacccgctgacggtcctgtgcgccggccccggcgacatgctggcgcagtat
cgtgagatcgagacgcagcgggctacgctgggctatgacatcgacggggtggtctacaag
gtcgacgatcttgccctgcaggcacggctgggggtccgctcgaccacgccccgctgggcg
attgcgcacaagttcccggccgagctcgcctggacccggctggaggcgatcgacatccag
gtgggccgcaccggcgcgttgtcaccggtggcgcgtctgaccccggtaaccgtgggcggc
gtcgtggtttccaacgccacgttgcacaacgaggattacatcgccgggcgggatgcctcg
ggcaacgcgatccgcgatggcaaggatatccgcgtgggcgactgggtgcaggtctatcgt
gcgggcgacgtgatcccgaaactggccgatgtcgatctcgcgaaacggcccgcggacgcg
gcgccctatgtctttccggacatatgccccgaatgcggcagcgccgcgatccgcgagcaa
ggcgatgcggtccgccgctgttccggcggcatgatctgcccggcccaggcggtggaaaag
ctgaaacacttcgtgtcgcgcaaggcctttgacatcgacgggctgggttcaaaacaggtc
gagcagttccacagcgatggctggattgcggagcccgcggacatattcaccctgcgggat
cgctatggcagtggcttgcaacagctgaaaaaccgcgatggctggggcgaaaaatccgcc
gagaacctgtttcgggcgatcgacgagaaacgttcgatcccgctggggcggctgatcttc
gcgcttggcatccgccatgtgggcgaagcggcgtcgaacctgctggcgacccattacggc
agctggtacgcgttcgaacgggcaatgggcgaagccgaggcgcaggagggggccgcgtgg
gaggacctgaccgccatcgacggggtcggcgcggtcatggccgggtcgctggtgacggcg
ttcgcgcaggatggtgaacgcgcctcgatcgaccggctggtggcgcatctggatgtcgag
gacgccgcgcgccccgacacggatggcagcccggtcgcgggcctgaccgtggtgttcacc
ggcacgctggaaatgatgacgcgcgccgaggccaaggcccgcgccgaggccttgggcgcg
cgggtgtcgggctcggtatcagccaggaccgacatcgtcatcgccggccccggcgccggc
tccaaggccaggaaggccgccgaactggggatcaggacgctggatgaagatggctggctg
gacctgatcggcgcgcgatga
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