Thauera humireducens Piv1: C4PIVTH_3757
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Entry
C4PIVTH_3757 CDS
T09509
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
thau
Thauera humireducens Piv1
Pathway
thau03030
DNA replication
thau03410
Base excision repair
thau03420
Nucleotide excision repair
thau03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
thau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C4PIVTH_3757 (ligA)
03410 Base excision repair
C4PIVTH_3757 (ligA)
03420 Nucleotide excision repair
C4PIVTH_3757 (ligA)
03430 Mismatch repair
C4PIVTH_3757 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thau03032
]
C4PIVTH_3757 (ligA)
03400 DNA repair and recombination proteins [BR:
thau03400
]
C4PIVTH_3757 (ligA)
Enzymes [BR:
thau01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
C4PIVTH_3757 (ligA)
DNA replication proteins [BR:
thau03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
C4PIVTH_3757 (ligA)
DNA repair and recombination proteins [BR:
thau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
C4PIVTH_3757 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C4PIVTH_3757 (ligA)
MMR (mismatch excision repair)
DNA ligase
C4PIVTH_3757 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C4PIVTH_3757 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
5_3_exonuc
HHH_3
Motif
Other DBs
NCBI-ProteinID:
CAH1748897
LinkDB
All DBs
Position
C4PIVTH:complement(3841163..3843220)
Genome browser
AA seq
685 aa
AA seq
DB search
MDLFASTAQQRIEALREEISRHDKAYYVLDAPTIPDVEYDRLFRELQALEAEHPELRTPD
SPTQRVGGRPLAQFPPVRHRVPMLSIRTETDTEASGAQAFDARVRRELGLVESDADVDYA
AELKFDGLAINLRYEHGLLVQAATRGDGETGEDVSSNVRTMRCVPLRLKGEAPEVMEIRG
EVYMRRDDFEALNRRQADAGDKTFVNPRNAAAGSIRQLDPAIAAKRPLSFFAYGLGETIG
WQVPATHGEVLDAIAAFGLPVCEHRRVVRGATGLAEFHAHIARLRDSLPFDIDGVVYKVN
SLELQRQLGFVTREPRWAVAHKYPAQEALTVLRGIEVQVGRTGALTPVARLEPVFVGGVT
VTNATLHNQDEIDRKDVRIGDWVIVRRAGDVIPEVVAPVIERRQGELPRFRLLEQFPTCP
VCGSHVVRGEDEAVARCTGGLFCPAQRKQALLHFAGRRAMDIEGLGDKLVDQLVDAAIVK
TPVDLYRLGVLALASLERMGEKSAQNLLAAIEKSRSTTLARFIFALGIRNVGEATARDLA
RHFGSLDALIAATAEALQQVQDVGPIVARSIVEFFDEPHNREVIEQLRAAGVHWPEGEPA
PAAAGALAGQTFVLTGTLPSLSRDEAKALIEAQGGKVAGSVSKRTTYVVAGADAGSKLAK
AQELGVDILDEDGLRDLLRKTDTNS
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggatctgttcgcttccactgcgcagcagcgcatcgaggcgctgcgcgaagagatctcg
cggcacgacaaggcctactatgtgctcgatgcgccgacaattccggacgtcgagtacgac
cgcctgttccgcgaactgcaggccctcgaggccgagcatcccgaattgcgcacgccggac
tcgccgacccagcgcgtcggcggcaggccgctggcgcagtttccgccggtgcggcatcgc
gtcccgatgctgtcgatccgcaccgagacggataccgaggcaagcggcgcgcaggccttc
gatgcccgggtgcggcgcgaacttggacttgtcgaaagcgatgccgacgtcgattacgcc
gcagaactgaagttcgacggactggcaatcaacctgcgctacgagcacggtttgctggtc
caggcggcgacgcggggcgatggtgagaccggcgaggacgtcagcagcaacgtgcgcacg
atgcgctgcgttccgctgcgcttgaagggcgaggcgcccgaggtcatggagatccgcggc
gaggtgtacatgcgccgggacgatttcgaggccctcaaccgacgccaggcggatgcgggc
gacaagaccttcgtcaatccgcgcaacgccgcggcgggcagcatccgtcagctcgacccg
gcgattgccgcgaagcggccgctgtccttcttcgcctatggcctgggcgagacgatcggc
tggcaggtgcccgccacgcacggcgaggtgctcgacgccatcgcggcatttggcctgccg
gtgtgcgaacaccgcagggtggtgcgtggcgcgaccgggctggccgagttccatgcccac
atcgcccgcttgcgcgacagcctgccgttcgacatcgacggcgtggtgtacaaggtcaat
tcgctcgagcttcagcgccagctcggcttcgtgacgcgcgagccgcgctgggccgtggcg
cacaagtatccggcgcaggaggcgttgaccgtgctgcgcggcatcgaggtgcaggtcggg
cgcaccggcgcgctgaccccggttgcgcgcctggagccggtgttcgtcggcggcgttacg
gtaaccaacgcgaccttgcacaaccaggacgagatcgaccgcaaagatgtgcgcattggc
gactgggtgatcgtgcgccgtgccggcgacgtgatccccgaggtggtggcgccggtgatc
gagcgtcggcagggcgaactgccgcgcttccgccttctcgagcagtttccgacctgtccg
gtgtgcggctcgcacgtcgtgcgtggcgaggacgaggccgttgcgcgctgcaccggtggc
ctcttctgcccggcccagcgcaagcaggcactgctgcattttgccggccggcgcgcgatg
gatatcgaagggttgggcgacaagctggtcgatcagctggtcgacgcggctatcgtcaag
acgccggtcgacctgtaccggcttggggtgctggcgctcgccagcctcgagcgcatgggc
gagaagtcggcgcagaacctgctcgccgcgatcgagaaaagccgttcgacgacgctggcg
cgcttcatcttcgcgcttggcatccgcaacgtcggcgaggcgactgcgcgcgacctggcg
cggcacttcggcagtctggacgcactgatcgccgccactgcagaggcgctgcagcaggtg
caggacgtcgggccgatcgtcgcgcgctcgatcgtcgagttcttcgacgagccgcacaac
cgcgaggtcatcgagcagttgcgcgcggccggcgtgcattggcctgagggcgagcctgcc
cctgcggccgctggtgcgctggcaggccagaccttcgtgctgaccggcacgctgccgagc
ttgagccgcgacgaagcgaaggcgctgatcgaggcgcagggcggcaaggtggcgggctcg
gtgtcgaagaggacgacctacgtcgtcgccggggcggatgccggttccaagctggcgaag
gcacaggagctcggcgtcgacatcctggacgaggatggcctgcgtgacctgctgcgcaaa
acggatacaaatagctag
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