Candidatus Tokpelaia hoelldoblerii: BHV28_13120
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Entry
BHV28_13120 CDS
T04701
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
thd
Candidatus Tokpelaia hoelldoblerii
Pathway
thd03030
DNA replication
thd03410
Base excision repair
thd03420
Nucleotide excision repair
thd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
thd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BHV28_13120 (ligA)
03410 Base excision repair
BHV28_13120 (ligA)
03420 Nucleotide excision repair
BHV28_13120 (ligA)
03430 Mismatch repair
BHV28_13120 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thd03032
]
BHV28_13120 (ligA)
03400 DNA repair and recombination proteins [BR:
thd03400
]
BHV28_13120 (ligA)
Enzymes [BR:
thd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BHV28_13120 (ligA)
DNA replication proteins [BR:
thd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BHV28_13120 (ligA)
DNA repair and recombination proteins [BR:
thd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BHV28_13120 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BHV28_13120 (ligA)
MMR (mismatch excision repair)
DNA ligase
BHV28_13120 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BHV28_13120 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
AQS41995
UniProt:
A0A1U9JVT7
LinkDB
All DBs
Position
complement(1398029..1400191)
Genome browser
AA seq
720 aa
AA seq
DB search
MTKTAVDQLSEAQAVKELKRLAEEIARHDHLYNTEDKPEITDADYDALRRRNLAIEQRFP
HLVRDDSPSRKVGAPVSEKFAKIRHAVPMLSLDNGFEDQDVEDFAERLRRFLRLPADKPL
DITAEPKIDGLSLSLRYEKGRLVSASTRGDGMVGEDVTVNARTIADIPQVLSGSPPDVLE
VRGEIYMGRRDFAALNARQVEAGNPPFANPRNAAAGSLRQLDSSITASRALRFFAYAWGE
VSALPARSQMGMVECFDKYGFTTNPLMKLCHDAAGLIRHYHKIEAMRAELDYDIDGVVYK
INDLALQNRLGFVSRSPRWALAHKFPAEQAITILRQIDIQVGRTGALTPVARLEPITVGG
AVVTNATLHNEDYIRGVDSAGAPIRDSGDIRIGDTVIIQRAGDVIPQIVDILPEKRPAGA
VPYPFPHTCPACGSHAVREEGEAVRRCMGGLVCPAQAVERIRHFVSRNAFDIEGLGEERV
EFFFSAEDPSVTIRSPADIFTLQKRQEQSLTKLENIDGFGATSVKKLYAAIDARRRIALS
RFLFGLGIRHVGEVNARRLARHYVNYTALAAAAGAARMPEAGEKADKGNEVWQELINIEG
IGGIVAGAVVDFYAEPHNVEVLGSLLAEVTPLDEELPVATDSPVAGKTIVFTGSLQRMSR
DEAKAMAERYGARAAGSVSAKTSLVVAGPGAGSKLNKARELGIEIIDEDAWFALVGADEK
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaaacggccgttgatcagttgagcgaggcgcaggcggttaaggaactcaaacgg
ctggcggaagagattgcccgccatgaccatctgtataataccgaggacaagccggaaata
acggacgcggactacgatgccttgcggcggcgcaatctggcgattgagcagcgcttcccg
catctggtgcgcgatgattcaccttcacgcaaggtcggggcgccggtatcggaaaaattt
gcaaagatccgccatgcggtgccgatgctttcgctcgacaatggctttgaagatcaggat
gttgaggattttgccgagcggttgcgccggtttttgcgcctgccggctgacaaaccgctg
gatataacggcagagccgaaaattgatggcctttcgctatcgctgcgttatgaaaagggg
cggctggtgagcgcctccacccgcggcgatggcatggtgggggaagatgtcacggtgaat
gcccgcaccattgctgatattccgcaggtgctctctggcagcccgccggatgtgctggaa
gtgcgtggcgaaatttatatggggcggcgtgattttgccgcactgaatgcgcggcaggtt
gaagcgggcaacccgccttttgccaatccgcgcaatgccgcggccggttcactgcggcag
cttgattcatcgattacagcaagccgcgccttgcggttttttgcctatgcctggggcgaa
gtcagcgcactgcctgcccgcagccagatgggcatggtggaatgttttgacaaatatggc
tttaccaccaatccgctgatgaagctgtgccatgatgcggcggggttgatacgccattat
cacaagattgaagccatgcgcgccgagcttgattatgatattgacggtgttgtctacaag
atcaacgaccttgccctgcaaaaccggcttggttttgtttcccgctcgccgcgctgggcg
ctggcgcataaattcccggcggaacaggcgataacaatcttgcgccagattgatattcag
gtcgggcgcacaggggcgctgacgccggtggcgcggctggagccgattacggtcggcggg
gcggtggtgacaaatgccaccttgcataatgaagattatatccgcggtgttgattccgct
ggcgcgcccatccgtgacagcggcgatatccgcattggggatacggtgattatccagcgg
gcgggcgatgttatcccgcagattgttgatattctgccggaaaagcgcccggccggtgct
gtgccttatccgtttccgcacacatgcccggcttgcggcagccatgcggtgcgtgaggag
ggcgaggccgtgcgccgctgcatgggcgggctggtttgcccggcgcaggcggtagaacgt
atccgccattttgtctcgcgcaatgcctttgatattgaagggctgggagaggaacgggtt
gagttttttttctcggcggaagacccgtctgtcaccatccgttcaccggcggatattttc
accttgcagaagcggcaggaacaatcgctgaccaaacttgaaaatattgacggttttggc
gcgacttcagtcaaaaaactctatgcggccattgatgcccgccgccggattgccctgagc
cggtttttgttcggccttggtatccgtcatgtcggcgaggtcaatgcccgccgtctggcg
cgccattatgtcaattatactgctttggctgctgcggccggcgcggcgcgaatgccggag
gcaggtgagaaagcggataagggcaacgaggtttggcaggaactgattaatattgaaggt
attggcggtattgttgccggggccgtggtggatttttatgccgagccgcataatgtggaa
gtgcttggctcgctcctggcggaagtcacaccgcttgatgaggaactgcctgttgccacg
gattcgccggtggcgggcaaaacaattgtctttaccggcagcttgcagcgcatgtcgcgt
gatgaggcaaaggcgatggcggaacgttatggcgccagggcggcggggtcggtttctgcc
aaaaccagccttgtggtagcggggccgggcgcggggtcaaaactcaacaaggcgcgtgaa
cttggcattgagattatcgatgaagacgcatggtttgcgcttgtcggcgcggatgagaaa
taa
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