Thermoanaerobacterium sp. RBIITD: SAMN05660242_0500
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Entry
SAMN05660242_0500 CDS
T10458
Name
(GenBank) DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
thed Thermoanaerobacterium sp. RBIITD
Pathway
thed03030
DNA replication
thed03410
Base excision repair
thed03420
Nucleotide excision repair
thed03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
thed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SAMN05660242_0500
03410 Base excision repair
SAMN05660242_0500
03420 Nucleotide excision repair
SAMN05660242_0500
03430 Mismatch repair
SAMN05660242_0500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thed03032
]
SAMN05660242_0500
03400 DNA repair and recombination proteins [BR:
thed03400
]
SAMN05660242_0500
Enzymes [BR:
thed01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SAMN05660242_0500
DNA replication proteins [BR:
thed03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SAMN05660242_0500
DNA repair and recombination proteins [BR:
thed03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SAMN05660242_0500
NER (nucleotide excision repair)
GGR (global genome repair) factors
SAMN05660242_0500
MMR (mismatch excision repair)
DNA ligase
SAMN05660242_0500
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SAMN05660242_0500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
HHH
PTCB-BRCT
BRCT_2
RNA_ligase
RNA_pol_A_CTD
HHH_8
HHH_3
cEGF
Motif
Other DBs
NCBI-ProteinID:
SNX53011
UniProt:
A0A285BDA7
LinkDB
All DBs
Position
I:complement(506636..508615)
Genome browser
AA seq
659 aa
AA seq
DB search
MTPEERVKELKEKINYHSYRYYVLDNPEISDYEYDMMMKELIKLEEEYPELKTSDSPTQR
IGGEPVKEFEPFTHVVVMQSLANAFSEGELRDFDRRVKSVVGDTEYVVELKIDGLSVELI
YENGLFVVGSTRGDGFVGENVTANLKTIKSIPLRLKDNLNLIVRGEVFMPRASFEKLNDE
RELSGESLFANPRNAAAGSLRQLNPKVTAKRDLDIFVFNLQRIEGVEIKTHIESLEFLKE
QGFKVSPHLKKCKDIDEVIEDIKYINLIRDKLPFDIDGAVIKVNDIKKREVLGSTVKDPR
WAIAFKYPAERQKTKVKGIIVQVGRTGALTPTAILEPVKIAGSVVSRATLHNEDYIRDKD
IKIGDTVIIQKAGEVIPEVVEVVKEDRTGDERNFVMPSKCPECGAIAIRLPGEAVTRCTG
LNCPAQLRRGIIHFASKDAMDIDGLGPAVISQLLDNHLIHNIADLYYLKYEDLIKLERMG
DKSVKNLLNAIEVSKSRDLDRVIFGLGIELIGSKAAFILADHFKTMESLQNATFEELTSI
PEVGPKMADSILAFFKEIQNRDIIKRLKAVGVNMVKKETVKLSNIFEGMTFVLTGTLEKY
KRDDAKKLIEDRGGKVTGSVSKKTNYVLAGRDPGSKLTKAQELGIKIIDEKEFENMLNQ
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgacacctgaagaaagggttaaagaattaaaagaaaagataaactaccatagttatagg
tattatgttctcgataatccagaaatatcagattatgaatatgacatgatgatgaaagag
ttgatcaagcttgaagaggagtaccctgaacttaaaacgtctgattcacctacacaaagg
attggcggtgaaccggtaaaggaatttgaaccttttacacatgtagtagtgatgcaaagc
cttgcaaatgcattttcagaaggtgagcttagggattttgatagaagggtaaaatccgtt
gtgggtgatacagagtacgtcgtagaattaaaaattgacggtttatctgttgagcttata
tatgaaaatggattatttgtggtaggttctacaagaggcgatggatttgttggtgaaaat
gtaacagcaaatcttaaaacgataaaatctataccattgaggcttaaggataatctgaat
cttattgtaagaggcgaagtatttatgccaagagcatctttcgaaaagctaaatgatgaa
agagaattaagtggtgagagcctatttgcgaatccgagaaacgctgctgcaggttcctta
aggcaattgaacccaaaagtaactgccaaaagagaccttgatatatttgttttcaactta
cagaggattgaaggagtagaaataaaaacacatattgaatcattggaatttttaaaagaa
caaggctttaaagtgagtccccatcttaaaaaatgtaaagacatagatgaagttatagaa
gatataaagtacataaatttaataagggacaaacttccatttgatatagatggcgcagtt
ataaaggtaaatgacattaaaaaaagggaggtcttaggatctaccgtaaaagatccaagg
tgggcgatagcatttaaatatcctgctgaaagacaaaaaacaaaagttaagggtataata
gtgcaggttggtaggactggcgcattgacgccgacggctattttagaacctgttaagata
gctggttctgtcgtctcccgtgcgacacttcacaatgaagattatataagggataaagat
ataaaaataggcgatacagtgattattcaaaaggctggtgaagtaatacctgaagttgtt
gaagtagtaaaagaagatagaacaggtgatgaaagaaattttgtaatgccgagcaaatgt
cctgaatgcggtgctatagcgatcaggcttccaggtgaagcggttacaaggtgtactggt
ttaaattgtccagcacaactaaggcgtgggataatacattttgcatcaaaagatgctatg
gacatagatggacttggaccagctgtgataagccagcttctagataatcatcttatacat
aatatagcggacctttattatcttaaatatgaggaccttataaaattggagcgtatgggt
gataaatctgtcaagaatctactaaatgcaattgaggtaagcaagagcagggatctagat
agagtgatatttggacttggcattgaattaattggaagtaaagccgcatttatacttgca
gatcattttaagacgatggaatcattacagaatgctacatttgaagaactgacaagtata
ccggaagtaggtcctaaaatggccgatagtattttagccttttttaaagaaatacaaaat
agagatattattaaaaggctaaaagctgtcggtgttaacatggtaaaaaaagagacagtt
aaattgagcaatatattcgaaggaatgacttttgtcttaacaggcacacttgaaaaatat
aaaagagatgatgctaaaaaactcatagaggatagaggtggcaaagtgacaggctctgtc
agtaagaaaacaaattatgttttggcaggacgtgaccctggttcgaaacttacaaaagca
caggaacttggtatcaaaattattgatgaaaaagagtttgaaaacatgctaaatcagtga
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