Thermoflavifilum sp.: IMW88_05140
Help
Entry
IMW88_05140 CDS
T09844
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
theo
Thermoflavifilum sp.
Pathway
theo03030
DNA replication
theo03410
Base excision repair
theo03420
Nucleotide excision repair
theo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
theo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IMW88_05140 (ligA)
03410 Base excision repair
IMW88_05140 (ligA)
03420 Nucleotide excision repair
IMW88_05140 (ligA)
03430 Mismatch repair
IMW88_05140 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
theo03032
]
IMW88_05140 (ligA)
03400 DNA repair and recombination proteins [BR:
theo03400
]
IMW88_05140 (ligA)
Enzymes [BR:
theo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IMW88_05140 (ligA)
DNA replication proteins [BR:
theo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IMW88_05140 (ligA)
DNA repair and recombination proteins [BR:
theo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IMW88_05140 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IMW88_05140 (ligA)
MMR (mismatch excision repair)
DNA ligase
IMW88_05140 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IMW88_05140 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
DNA_ligase_ZBD
BRCT
HHH
PTCB-BRCT
BRCT_2
Auto_anti-p27
DZR_2
Motif
Other DBs
NCBI-ProteinID:
QOR76918
UniProt:
A0A7M1TAJ9
LinkDB
All DBs
Position
complement(1239216..1241318)
Genome browser
AA seq
700 aa
AA seq
DB search
MYAPEEEKQLSRLLQDLLKRNYDHEAPAEQVKRLRQALRYAEWRYYVQDNPVISDGEYDA
LFHRLKQLETQHPELITPDSPTQRIASGLTENFPTVAHLTPMLSLDNSYNAADLRDWDRR
VKELAGISRVDYCIEPKYDGASISLIYENNILWRGATRGDGIRGDEITTNIKQIKAIPLS
ADFAALGIRRVEIRGEILMHKETFKALNQQRLAENLPPFANPRNATSGSLRMIDPREVAR
RKLQAVLYQISFVEMAHHQPLPETLLSQSGVIKTLHQLGFPTPYGLMKVVHHIDEAIQYL
QEFEQLRDSLPYEIDGMVIKVDDIRLQEKIGATTHHPRWAIAYKFKARQATSVLRKVEFQ
VGRTGTITPVAKIDPVPIGGVTVSSISLFNEDVVREKDLRIGDTVLVERAGDVIPYIVKP
VVEMRTGQEKPIVFPTHCPVCGDPLVKPHGEAAWRCVNMNCEAQVLERLIHFVSKDAMDI
KSLGEANVRRFYELGLLRSIPDIYRLDYDKIRRLEGFGEKSVHNLQQAIEASKKQPLNRL
IFALGIRYVGETTARTLAQAIDYLPDLHHWTIEQLTQLPDIGPKVASSIYDFFHNSDNMH
MLEELEKLGVNMRNKPQQAMQAGKLAGKTFLFTGTLPHLKRQEAEALVEQHGGKIASSVS
RTLDYLVVGEDPGSKLEKARKIPSVQIIDESQFLKLIESA
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgtatgcacctgaagaagaaaaacaactttcccgactcctgcaggatttattaaaaagg
aactacgatcatgaagcaccggccgaacaggtaaaacggctacgtcaggccctgcgctat
gccgagtggcgatactatgtacaggacaatcctgtgatcagcgatggggaatatgatgcc
ttatttcatcgactgaaacaactggaaacacaacacccggagctaattacgcccgattca
cccacccagcggattgccagcggtttgacggaaaatttccctacggtcgcccatctcacc
cctatgctttcgctggataactcctacaatgcggccgacctgcgcgattgggacaggcga
gtgaaggaactggctggtatttcccgggtggattactgcattgagccgaaatacgatggg
gccagcatttcattgatttatgaaaacaatatcctgtggcgcggcgccacacgcggcgat
ggcatccggggtgatgaaattaccaccaatatcaaacaaattaaagccatcccgctatca
gccgattttgctgcacttggcatccggagggtagaaatccgcggcgaaatcctgatgcat
aaagaaactttcaaagcgctcaaccagcaacgcctggccgaaaaccttccgcccttcgcc
aatccacgtaatgccacatcaggatccctgcgcatgatcgatccccgtgaggtagccaga
cgtaaactgcaggctgtgttgtaccagatcagtttcgtggaaatggcccatcaccaaccc
ctgcccgaaaccctgcttagccaatcgggtgttattaaaaccctgcaccaattaggtttt
cccacaccttacggtttgatgaaagtcgtacaccatatcgacgaggcgattcaataccta
caagaatttgaacaattacgcgattccctcccgtatgagatcgacggcatggtgattaaa
gtcgatgatatccgtcttcaagaaaaaataggcgccaccacgcatcacccacgctgggcc
attgcttataaattcaaagcccgccaggctacgagtgtgttgcgcaaagtggaatttcag
gtaggacgtaccggcaccatcaccccggtggctaaaattgatcctgttcccattggcgga
gttaccgtgagctccatttctttattcaatgaagatgtagtacgggaaaaggatctgcgt
atcggcgacactgtactggtggaacgtgccggcgatgtgataccttacatcgtgaaacct
gttgtggaaatgcgaactggccaggaaaaaccgattgtattccccacccattgtccggtg
tgtggcgacccgctggtgaaaccccacggtgaagccgcctggagatgtgtgaacatgaat
tgcgaggcgcaggtgctggaacgcctgatccattttgtaagcaaggacgctatggatatc
aaaagcctcggagaggccaacgtacgtcgattttacgagctgggattgttgcgcagcata
cccgatatctatcggctggattatgataaaatccgccggcttgaaggcttcggcgaaaaa
tctgtccacaaccttcagcaggccattgaggcttcaaaaaaacagcccttaaaccggctc
atctttgctctgggcattcgatatgtgggcgaaactaccgcccgcacactggctcaggct
attgactacctgccagatttgcaccactggaccattgaacaacttacccagcttcccgat
atcggtcccaaagtagccagcagcatttacgattttttccataacagcgacaatatgcac
atgctggaagaattggagaagctgggcgtgaatatgcgcaacaaacctcaacaggccatg
caggccggaaaattagctggcaaaacttttttgtttaccggtaccttgcctcatttgaaa
cgtcaggaagccgaggcgctcgtggagcaacacgggggtaaaatcgccagcagcgtgagt
cgcactctggattatctggtcgtgggtgaagaccccggctccaagctcgagaaagcccgg
aagataccctccgtacaaatcatcgatgaatctcaatttttaaaactgattgaatccgcc
tga
DBGET
integrated database retrieval system
