Thermaerobacter sp. PB12/4term: DYI95_001250
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Entry
DYI95_001250 CDS
T06418
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
thep
Thermaerobacter sp. PB12/4term
Pathway
thep03030
DNA replication
thep03410
Base excision repair
thep03420
Nucleotide excision repair
thep03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
thep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DYI95_001250 (ligA)
03410 Base excision repair
DYI95_001250 (ligA)
03420 Nucleotide excision repair
DYI95_001250 (ligA)
03430 Mismatch repair
DYI95_001250 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thep03032
]
DYI95_001250 (ligA)
03400 DNA repair and recombination proteins [BR:
thep03400
]
DYI95_001250 (ligA)
Enzymes [BR:
thep01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DYI95_001250 (ligA)
DNA replication proteins [BR:
thep03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DYI95_001250 (ligA)
DNA repair and recombination proteins [BR:
thep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DYI95_001250 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DYI95_001250 (ligA)
MMR (mismatch excision repair)
DNA ligase
DYI95_001250 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DYI95_001250 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Zn_ribbon_NUD
Auto_anti-p27
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QIA28142
LinkDB
All DBs
Position
292805..295105
Genome browser
AA seq
766 aa
AA seq
DB search
MEAARARVEALREQIRHHDYLYYVLDRPEIDDAAYDALMRQLRELERRFPQLVTPDSPTQ
RVGGRPAAPFARVEHAEPMLSLDNAFSREELEAFDQRVRRAVGDDVAYVAELKIDGLSIA
LTYEGGRFVRGATRGDGEAGEDVTANLRTIRSLPLRLRDRERPVPRRVEIRGEVYMTFDA
FRRLNQEQEARGLAPFANPRNAAAGSVRQLDPAVTASRSLNLWVYALAGWEGDEPAPRTQ
WEVLQTLRAWGLPVNPHARRCTSLDELFAYIDEWAERRHQLPYLTDGIVIKVDDLEQQRQ
LGATARSPRWAIAYKFPAEKARTRVRDILVSVGRTGALTPVAVLDPVLLAGTTVSRASLH
NADYIREKDVRIGDLVVVHKAGEIIPEVVEVVKEARTGAERPFTMPEHCPACGSPVVRVE
GEAATRCPNAACPAQQLERIRHFASRDAMDIEGLGPAIIEQLVGRGLVRDVADLYHLEPE
PLAQLERMGPKSAANLVAAIDASRGRPLRRLLYGLGIRFVGERVAGLLARHFGTIQHLMA
AGQDELMAVREIGPRIAESVATFFQDEHNRQLICRLAEAGVQAAAGAPEPGSAAARAVVA
AGTAAGGPGGAAGTAPGGPAATGTGAPGTAVGSVAATGAGVAAGGGAGAGDGAAGAGFVP
GAGPGAGAGAAGAPAGWPDVPPEVRERVAGKTFVFTGGLASMTRDEAQELVEALGGRATG
SVSRKTDYVVAGEGAGSKLARARELGIPVLDEAAFLRLVGREPAEG
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
ctggaggcggcccgggcccgggtggaggccctgcgcgagcagatccggcatcatgactac
ctttattacgtgctcgaccggcccgagatcgacgacgccgcctacgacgccctgatgcgc
cagctgcgggagctggagcggcggttcccccagctggtcacccccgactcgcccacccag
cgggtcgggggccgcccggccgcgccctttgcccgggtcgaacacgccgagcccatgctc
agcctggacaacgccttcagccgcgaggagctggaggccttcgatcagcgggtccgccgc
gcggtgggggacgatgtggcctatgtggcggagctgaagatcgacggcctgtccattgcc
ctgacctacgagggaggccggttcgtccgcggcgccacccgcggcgacggcgaggcgggg
gaagacgtcaccgccaacctgcgcaccatccgcagcctgcccctgcggctgcgggaccgg
gagcggccggtgccccggcgggtggagatccgcggcgaggtctacatgaccttcgacgcc
ttccgccggctcaaccaggaacaggaggcacgggggctggcgcccttcgccaacccgcgc
aacgcggcggccggctcggtgcgccagctggatccggcggtgacggcctcccggtcgctg
aacctgtgggtctacgccctggcgggctgggagggggacgagccggcgccgcgcacccag
tgggaggtgctccagaccctgcgggcgtgggggctgcccgtcaacccccacgcccggcgg
tgcaccagcctggacgagctcttcgcctacatcgacgagtgggccgagcggcgccaccag
ctgccgtacctgaccgacggcatcgtgatcaaggtcgacgacctggaacagcagcggcag
ctgggcgccacggcccgcagcccgcgctgggccatcgcctacaagttcccggcggagaag
gcgcggacgcgggtgcgggacatcctggtcagcgtgggccgcaccggtgccctgacgccg
gtggcggtgctggatcccgtgctgctggcggggaccaccgtcagccgggccagcctgcac
aacgccgactacatccgggagaaggacgtgcgcatcggcgatctggtggtggtccacaag
gcgggggagatcatccccgaagtggtcgaggtggtgaaggaggcccgcacgggcgccgag
cggcccttcaccatgcccgagcactgccccgcctgcggcagcccggtggtgcgggtggaa
ggcgaggcggccacccgctgtcccaacgcggcctgcccggcccagcagctggagcgcatc
cgccacttcgcctcgcgggacgccatggacatcgaggggctggggccggccatcatcgag
cagctggtcggccgggggctggtgcgcgacgtggccgacctctaccacctggagccggag
cccctggcccagctggagcgcatgggtcccaagtccgccgccaacctggtggccgccatc
gacgcttcccgggggcggccgctgcgccggctgctctacggcctgggcatccgcttcgtg
ggcgagcgggtggccgggctcctggcgcggcacttcggcaccatccagcacctgatggcg
gcggggcaggacgagctgatggccgtccgcgagatcgggccccgcatcgccgagagcgtg
gccaccttcttccaggacgagcacaaccgccagctgatctgccggctggcggaggcgggg
gtgcaggcggcggcgggcgcgccggagccgggcagtgccgcggcgcgggcggtggtggcg
gcagggacggccgcgggcgggcccgggggagcagcgggcacggcccctggcggcccggcg
gctacaggaacaggggcgccagggaccgcggtgggcagcgtcgcagcgacgggcgccggg
gtggccgcgggcggcggggcaggcgccggggatggggctgcgggggccgggttcgtccct
ggagccggccccggggcgggagcgggtgccgccggtgcgccggccggttggcccgatgtg
ccgcccgaggtacgggagcgggtggccggcaagaccttcgtgttcaccggcggcctggcc
agcatgacccgggatgaggcccaggagctggtggaggcgttgggcggccgggccaccggc
agcgtcagccgcaagacggactacgtggtggcaggcgagggggcgggttccaagctggcc
cgggcgcgggagctgggcatccccgtgctggacgaggcggccttcctgcggcttgtcggc
cgcgagccggcggaagggtga
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