Thermosipho sp. 1070: Y592_08165
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Entry
Y592_08165 CDS
T04909
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ther
Thermosipho sp. 1070
Pathway
ther03030
DNA replication
ther03410
Base excision repair
ther03420
Nucleotide excision repair
ther03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ther00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Y592_08165
03410 Base excision repair
Y592_08165
03420 Nucleotide excision repair
Y592_08165
03430 Mismatch repair
Y592_08165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ther03032
]
Y592_08165
03400 DNA repair and recombination proteins [BR:
ther03400
]
Y592_08165
Enzymes [BR:
ther01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Y592_08165
DNA replication proteins [BR:
ther03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Y592_08165
DNA repair and recombination proteins [BR:
ther03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Y592_08165
NER (nucleotide excision repair)
GGR (global genome repair) factors
Y592_08165
MMR (mismatch excision repair)
DNA ligase
Y592_08165
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Y592_08165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
DNA_ligase_ZBD
HHH_3
RNA_pol_A_CTD
5_3_exonuc
DNA_gyraseB
Radical_SAM
Motif
Other DBs
NCBI-ProteinID:
ANQ54364
LinkDB
All DBs
Position
complement(1567586..1569571)
Genome browser
AA seq
661 aa
AA seq
DB search
MDKIKDEIEKLRKEIEYHNYRYYVLANPVISDEEYDKLLKKLIDLEKKYPEYYSSNSPTQ
KVGGGLIQGFKKVEHSIPMLSLDNTYNELEMREFDNRIKKMLKTNIVQYVCELKIDGISV
AIRYENGYFKTAISRGNGIIGDDISENVKKIKSIPLRLFKNIDIEVRGEIYMPIKEFEKY
NKLAEKEGLQPFANPRNAAAGTIRQLNSSIVARRNLDSFIYHIVNPEKYGLTTQWEALNF
LKEIGFKVNPHSKLCQDIECVVNFWKKWTDGRKKLDYWIDGLVIKVNNFEYQKILGETTK
SPRWAIAFKFPAIQKETKILDVELNVGRSGVITPVAIFEPIDLDGSIVKRASLHNFDYIK
EKDIKIGDHVLVEKAGGIIPQVVNIIKEKRTGSEKDIEIPKKCPICNGEIGKLSDDETAI
RCLNPHCPQKLKRHLEIFVSKSAFDISGIGEKIIDKIVDAKLVDDVADIFYLTPFELAQI
SGLGQKSIAKILEQINKAKHTPLNRVIIGLGIPLVGEKTAKILAKRFKSLENLSNASYEE
LVEIENIGPEIAKSIINYFKNEKTKEIIEKLKKAGVNLEKKEMKKSDILKGLTFVITGKL
NSLSRDKAIELIELNGGKVSNSISTKTNYLIVGENPGSKLKKAQQLGVKILSEEDFLKMI
T
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggataaaatcaaagatgaaattgaaaaattacgaaaagaaattgaatatcataattac
agatattatgttttggctaatccggtaataagtgatgaagaatacgataaacttttaaaa
aaattaatagatctggaaaaaaaatatccggaatactattcatcaaattctccaacacaa
aaagtgggaggaggattaattcaaggatttaaaaaagtggaacattcaattcccatgcta
agtttagacaatacatacaacgaactagaaatgagagaatttgataatagaataaaaaaa
atgttaaagacaaacatagtacaatatgtatgtgaattaaaaatagatggtatctccgtt
gcaataaggtatgaaaatggatattttaaaactgcaatcagtcgtggcaatggaataatt
ggcgatgacatttcagaaaatgtaaaaaaaataaaatcaatacctttgcgattattcaaa
aatattgatatagaagttcgaggcgagatttatatgcctattaaagaatttgaaaaatac
aacaaattagccgaaaaagaaggcttacaaccttttgcaaatccacgtaatgcagcagct
gggacaattcgccaattgaattcttcaattgttgcaagaagaaaccttgattcatttatt
tatcatatagtaaatcctgaaaaatacggattaactactcaatgggaagctttaaacttc
ttgaaagaaatagggtttaaagttaatccgcactcaaaactgtgccaagatatagaatgt
gttgtaaatttttggaaaaaatggaccgatggtaggaaaaaattagattattggatcgat
ggattggtaataaaggttaataactttgagtatcaaaaaattttgggagaaaccacaaaa
tcaccaagatgggctattgcttttaaattccctgctattcaaaaagaaacaaaaatatta
gacgtagaattaaatgttggaagaagcggagttattactcctgttgcaatctttgaacca
atagatttagatggcagtatcgtaaaacgtgcatcattacataactttgattacataaaa
gaaaaagacattaaaatcggtgatcacgtcctcgttgaaaaagcgggaggtataattcca
caagttgtaaacataatcaaagaaaaaagaacaggttccgaaaaagatattgaaattcca
aaaaaatgtcccatttgcaatggcgaaattggaaaattatctgatgatgaaaccgccatt
agatgtctcaatccacattgtcctcagaaacttaaaagacatttagaaatatttgtatct
aaatctgcttttgatatttctggtatcggtgaaaaaattatcgataaaatagttgacgca
aaattggtagatgatgtagccgatatattttacctaactccctttgagctagcacaaata
agcggattaggtcaaaaatccatcgcaaaaattctagaacaaataaataaagcaaaacat
actccactaaacagagttattattggtcttggcataccattagttggtgaaaaaactgca
aaaatactagcaaaaagatttaaaagcttagaaaacctatccaatgcttcctatgaagaa
ctagttgaaattgaaaatataggtcctgaaattgccaaaagtataataaattatttcaaa
aacgaaaaaacaaaagaaattattgaaaaattgaaaaaggctggagtaaatcttgaaaaa
aaggaaatgaaaaaatcggatatattaaaaggactaacatttgtaattacaggtaaatta
aactctctctcaagagataaagctatagaactaatagaattaaacggtggcaaagtatca
aattccataagtaccaaaacaaactacctaatagttggtgaaaatccaggctcaaagttg
aaaaaagcacaacaattaggtgtaaaaattctatcggaagaagactttctaaaaatgatt
acttaa
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