Thermomonas aquatica: FHQ07_01500
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Entry
FHQ07_01500 CDS
T06025
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
thes
Thermomonas aquatica
Pathway
thes03030
DNA replication
thes03410
Base excision repair
thes03420
Nucleotide excision repair
thes03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
thes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FHQ07_01500 (ligA)
03410 Base excision repair
FHQ07_01500 (ligA)
03420 Nucleotide excision repair
FHQ07_01500 (ligA)
03430 Mismatch repair
FHQ07_01500 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thes03032
]
FHQ07_01500 (ligA)
03400 DNA repair and recombination proteins [BR:
thes03400
]
FHQ07_01500 (ligA)
Enzymes [BR:
thes01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FHQ07_01500 (ligA)
DNA replication proteins [BR:
thes03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FHQ07_01500 (ligA)
DNA repair and recombination proteins [BR:
thes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FHQ07_01500 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FHQ07_01500 (ligA)
MMR (mismatch excision repair)
DNA ligase
FHQ07_01500 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FHQ07_01500 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
VMAP-M8
Motif
Other DBs
NCBI-ProteinID:
QDA56089
UniProt:
A0A5B7ZN54
LinkDB
All DBs
Position
complement(320503..322842)
Genome browser
AA seq
779 aa
AA seq
DB search
MTDIAARIADLRRRIEDANRRYHELDDPDLTDAQYDALVRELEALERAHPQLAAADSPTR
KVGAAPSGRFAAVEHAVPMLSLGNAFSDEEVADFVRRIRERLDREDLAFSAEPKLDGLAI
SLRYEQGVFVQGATRGDGATGEDVTANLRTIKVIPQRLAGEGWPRVLEVRGEVYMARADF
ERWNEHARLHGGKVLANPRNGAAGSLRQIDAQQTAQRPLSFFAYGIGQVEGGALPATHSA
TLAKLRDWGFPVSDLATVVHGLDGLLEYYHRIGVARDGLAFDIDGVVYKLDDIAGQREMG
FVSRAPRWAIAHKFPAQEQATVLESIEVNVGRTGAVTPWALMRPVHVGGVTVTRATLHNA
DHVARLDVRAGDTVIVRRAGDVIPEVVQVVLEQRPPGTQPWSMPTTCPVCGSEVVREEGA
AVWRCSGELSCPAQLVQSVFHFASRRAMDIDGLGERYIESLAEFGYLRDVSDLYGLGLDD
LLEMKRRADERDGSTPETVKAGKVATKWADNLIAAIDASRDTTLARFLYALGIEHVGEST
AKALAQWIGDLALIRRLPWPLFKRVPDIGGEVARSLGHFLDQPGNQQVIDRLLERGVRIG
DTHAPNPKLGEALDFATLLADLEIPKVTPVRAAQLGATFADARALLDAPAHNLMTAGLPA
DSASAVVAWLENEANAGLLLRCAQAQTELRARLPERSEQAAGPLDGKTVVLTGGLAAMSR
DEAGAKLEALGAKVAGSVSKKTSLVVAGEAAGSKLAKAQELGIEIWDEAALLAFLAEHA
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacatcgccgcccgcatcgccgatctccgccgacgcatcgaggacgccaaccgg
cgctaccacgagctggacgatccggacctcaccgatgcgcaatacgacgcattggtgcgc
gaactggaagcgctggaacgcgcgcacccgcaactggccgcggccgattcgcccacgcgc
aaggtcggcgcggcgccgtccggccgcttcgccgcggtcgaacatgcagtgccgatgctg
tcgctgggcaatgccttcagcgatgaggaagtggccgacttcgtccgccgcatccgcgaa
cggctggatcgcgaggacctggcgttttccgccgagcccaagctcgatggcctggcgatc
agcctgcgctacgaacaaggcgtgttcgtgcagggcgcgacgcgtggcgacggcgccacc
ggcgaggacgtcaccgccaacctgcgcacgatcaaggtgattccgcagcggctcgcgggc
gagggctggccacgcgtgctcgaagtgcgcggcgaggtttacatggcgcgcgccgacttc
gaacgctggaacgaacacgcacgcctgcacggcggcaaggtgctggcgaatccgcgcaac
ggcgccgccggttcgctgcggcagatcgacgcgcaacagaccgcgcaacggccgctgagc
ttcttcgcctacggcatcggccaggtggagggcggggcgctgccggccacgcattcggcc
acgctcgcgaagttgcgcgactggggctttccggtgagcgacctggccaccgtcgtgcac
ggactggacggcttgctggagtattaccaccgcatcggcgtagcccgcgacggcctggcc
ttcgacatcgacggcgtggtctacaagctggacgacatcgccggccagcgcgagatgggt
ttcgtctcgcgcgcgccgcgctgggccatcgcccacaagttcccggcgcaggaacaggcc
acggtgctggaatccatcgaggtcaacgtcggccgcaccggcgcggtcacgccgtgggcg
ctgatgcggccggtgcacgtgggcggcgtcaccgtcacccgcgccaccctgcacaacgcc
gaccacgtggcccggctcgacgtgcgcgcgggcgacacggtgatcgtgcgccgcgccggc
gacgtgatcccggaagtggtgcaggtggtgctggaacagcgcccgccgggcacgcagccg
tggtcgatgccgacgacgtgcccggtctgcgggtcggaagtcgtgcgcgaggaaggcgcg
gcggtgtggcgctgctcgggcgaattgagctgcccggcgcagctggtgcaatcggtgttc
catttcgcctcgcggcgcgcgatggacatcgacgggctgggcgagcgctacatcgaatcg
ctggccgagttcggctacctgcgcgacgtgtccgacctgtacggcctcggcctcgacgat
ttgctggaaatgaagcgccgcgcggacgagcgcgacggctccaccccggagacggtgaaa
gccggcaaggtggcgaccaagtgggcggacaacctgatcgccgcgatcgacgccagccgc
gacaccacgctggcgcgcttcctgtacgcgctcggcatcgagcatgtcggcgaaagcacg
gccaaggcgttggcgcagtggatcggcgacctcgcgctgatccgccgcctgccgtggccg
ttgttcaagcgggtgcccgacatcggcggcgaggtggcgcgctcgctcgggcacttcctc
gaccagccgggcaaccagcaggtcatcgaccgcttgctggaacgcggcgtgcgcatcggc
gacacgcatgcgccgaatccgaagctcggcgaagcgttggatttcgccacgctactggcc
gatcttgaaatccccaaagtcaccccggtgcgcgccgcgcagctcggcgccaccttcgcc
gatgcgcgagccttgctcgatgcgcccgcacacaacctgatgacggctggcctgccggcc
gacagtgccagtgccgtggtcgcctggctggagaacgaggccaatgccggcctgctgttg
cgctgcgcgcaggcgcagacggaactgcgcgcgcgcttgcccgagcgcagcgaacaggcc
gcgggcccgctggacggcaagaccgtggtgctgaccggcgggctggcggcgatgagccgc
gacgaggccggtgcgaaactggaagcgctcggcgcgaaggttgccggcagcgtgtcgaag
aagacgtcgctggtggtcgccggcgaagccgccggcagcaaattggcgaaggcgcaggaa
ctcggcatcgagatctgggacgaagccgcactgcttgcgttcctggccgaacacgcatga
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