Thermoleptolyngbya sichuanensis: HPC62_04515
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Entry
HPC62_04515 CDS
T06607
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
theu
Thermoleptolyngbya sichuanensis
Pathway
theu03030
DNA replication
theu03410
Base excision repair
theu03420
Nucleotide excision repair
theu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
theu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HPC62_04515 (ligA)
03410 Base excision repair
HPC62_04515 (ligA)
03420 Nucleotide excision repair
HPC62_04515 (ligA)
03430 Mismatch repair
HPC62_04515 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
theu03032
]
HPC62_04515 (ligA)
03400 DNA repair and recombination proteins [BR:
theu03400
]
HPC62_04515 (ligA)
Enzymes [BR:
theu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HPC62_04515 (ligA)
DNA replication proteins [BR:
theu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HPC62_04515 (ligA)
DNA repair and recombination proteins [BR:
theu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HPC62_04515 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HPC62_04515 (ligA)
MMR (mismatch excision repair)
DNA ligase
HPC62_04515 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HPC62_04515 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
Auto_anti-p27
RNA_pol_A_CTD
HHH
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QKD81546
UniProt:
A0A6M8BBX4
LinkDB
All DBs
Position
1037589..1039685
Genome browser
AA seq
698 aa
AA seq
DB search
MAAKPPNSATASPQAPTPAQRAAELRNLLNQASYEYYVLDAPTLPDAVYDQLYRELQDLE
AADPTLISPDSPTQRVGDRPSSQFTSIRHNIPLYSLENAFNLAEVATWDTRWRRYYATVA
EAQPALPDSAYVCELKIDGSALALTYENGLLVRGATRGDGVTGEDITPNVRTIRSIPLRL
KGEHLPPVVEVRGEAFLPLDVFQQINQEREEAGEALFANPRNAAAGTLRQLDSRIVARRR
LDFFAYTLHLAGDGDFPKPSSQWEALDLLQTLGFRVNPNRKLCESLEEVRQFADHWERAR
FDLPYLTDGLVIKLNGLALQERLGFTQKFPRWAIALKYPAEEAPTVVQGISVQVGRTGAV
TPVAELAPVQLAGTTVSRATLHNADFIAALDVRVGDTVIVRKAGEIIPEVVRVLPELRPA
GAEPFQLPTHCPVCGQPLVRPEEEAVTRCVNSSCPAIVRGSLVHWASRQALDINGLGEKW
VQQLGDRGLLNSVADLYDLTAEQLIGIDRMGKKSAENLVRAIAQSKTQPWWRVLFGLGIR
HVGAVNAQTLAEAFPTVEALAAAEESDIAAVYGIGPEIARSVYQWFRVPANQALVERLRA
AGLTLAGEAQPASDKPQTLAGKTFVLTGTLPTLKRDEAAERIKAAGGKVTSSVSKKTDFV
VVGEDAGSKLEKAIALKITQLSEADLLKLLSNSEGASP
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
gtggcagccaaacctcccaattctgcaactgcttctccccaagcccccacgccagcgcag
cgggccgccgaactgcggaacctgctgaaccaggccagctacgaatattacgtgctggat
gcgccaacgctgcccgatgcggtgtatgaccagctttatcgagagcttcaggatctggaa
gccgcagacccgacgctgatttcgcccgacagtcccacccagcgcgtgggcgatcgcccc
tccagccaattcacctccatccgccacaatattccgctctacagcctggaaaacgccttc
aacctggcagaagttgccacttgggacacgcgctggcgacgctattacgcgaccgttgcc
gaggctcagcccgcgctgcccgactcggcctatgtttgcgagctaaaaattgacggctcc
gccctggcgctgacctacgaaaacgggctgctggtgcgcggggcgacgcggggcgatggc
gtaacgggggaagacattacgcccaacgtgcggacgattcgctcgattccgctgcggctg
aagggcgaacacctgccgcccgtggtggaggtgcggggcgaggcgtttttgccgctggac
gtgtttcagcagattaaccaagagcgcgaggaggcgggcgaggccctgtttgccaacccg
cgcaacgcggcggcgggaaccctgcgccagctcgattcgcggattgtggcgcggcggcgg
ctcgacttttttgcctacacgctgcatcttgcaggagacggggattttcctaagccttcg
tctcagtgggaagcgctggatttgctgcaaacgctcggctttcgggtgaatccgaaccgc
aagctgtgcgaatccttggaggaggtgcgccagtttgccgaccactgggagcgggcccgg
tttgacctgccctacctcactgacgggctggtgatcaagctgaacgggctggcgttgcag
gaacggctgggctttacccaaaagtttccgcgctgggcgatcgccctcaagtatcccgcc
gaagaagcgccgaccgtcgtgcagggcatttccgtgcaggtggggcggacgggcgcggtc
acgcctgttgcagaactggccccagtgcagcttgcaggcacgactgtttcgcgggcgacg
ctgcataatgccgacttcatcgcggcgctggatgtgcgcgtgggcgatacggtgattgtg
cgaaaggcgggcgaaatcattcccgaagtggtgcgcgtgctgccggaactgagacccgcc
ggggcagaaccgtttcaactgccgacccattgccccgtgtgcgggcagcccttggtgcgc
ccggaagaggaggccgtcacccgctgcgtgaattcatcctgtccggcgatcgtgcgcggt
tccctggtgcattgggcctcgcggcaggcgctcgatatcaacggactgggcgagaagtgg
gtgcagcagttgggcgatcgcggcttgctgaacagcgttgccgacctgtatgacctgacg
gcagagcaactgatcggcattgaccggatgggcaaaaaatccgctgaaaatctagttagg
gcgatcgcccaatccaaaacccaaccctggtggcgcgtcttatttgggctgggtatccgg
cacgtcggcgcagtcaacgcacaaacgctggccgaagcctttccaaccgtcgaagccctg
gctgcggctgaagaatcggacattgccgctgtctacggcattggcccggaaatcgcccgg
tcggtctatcagtggttccgcgtacctgccaaccaagcgctcgtggagcggctgcgggcg
gcagggttgaccctggcaggcgaggcgcaacctgcatctgacaaaccccaaacgctggca
ggcaaaacctttgtgctgacgggaaccctgcccacgctgaaacgggatgaagccgctgaa
cggattaaagcagcaggcggcaaggtgacgagttccgttagcaagaagactgatttcgtg
gtcgtgggtgaagacgcggggtcaaaattggaaaaggcgatcgctctaaaaatcacccaa
ttgtcagaggcggatctcctcaaattactgtcaaattcagagggagcgtcgccctga
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