Thermosynechococcus sp. TA-1: JW907_05590
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Entry
JW907_05590 CDS
T10117
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
they Thermosynechococcus sp. TA-1
Pathway
they03030
DNA replication
they03410
Base excision repair
they03420
Nucleotide excision repair
they03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
they00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JW907_05590 (ligA)
03410 Base excision repair
JW907_05590 (ligA)
03420 Nucleotide excision repair
JW907_05590 (ligA)
03430 Mismatch repair
JW907_05590 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
they03032
]
JW907_05590 (ligA)
03400 DNA repair and recombination proteins [BR:
they03400
]
JW907_05590 (ligA)
Enzymes [BR:
they01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JW907_05590 (ligA)
DNA replication proteins [BR:
they03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JW907_05590 (ligA)
DNA repair and recombination proteins [BR:
they03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JW907_05590 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JW907_05590 (ligA)
MMR (mismatch excision repair)
DNA ligase
JW907_05590 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JW907_05590 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
PTCB-BRCT
DNA_ligase_ZBD
BRCT_2
HHH
Motif
Other DBs
NCBI-ProteinID:
QSF50217
LinkDB
All DBs
Position
complement(1183674..1185746)
Genome browser
AA seq
690 aa
AA seq
DB search
MVSKEPPMTTAAERIQQLRHLLQRASYAYYALDQPIMEDEVYDQLYRELQELEAAHPEYI
TPDSPTQRVGEAPVSQFESVSHRIPLYSLENAFTFADMVAWQERWQRYWRSLRREEPIPP
TEYVCELKMDGVALALTYENGLLVRGATRGDGQRGEDITSNVRTIRTIPLRLAIENPPPI
VEVRGEAFLPLARFHQLNQERQAQGEAPFANPRNAAAGTLRQLDPRIVAQRQLDFFAYAL
HLPEGGSVPWDENQAGEPQSQRQVLNALQRLGFRVNPHNADCPDLEAVKAYYDHWQTARH
QLPYLTDGIVVKLNDLTLQQTLGFTQKFPRGCVAWKYEPEQAITDVVAITIQVGRTGALT
PVAELVPVQLAGTTVSRATLHNADYIAELDLHIGDKVVIHKAGEIIPEIVRVFPELRSPT
AQPFTMPTVCPECHQPVVRPANEAVSRCVNPRCPAIVRGQILHWASRDALDIQGLGEKLV
QQLVAKELVHTPADLYRLTAAQLLRLERMGQKSAAKLLQAIADSKEQPWPRVLYGLGIRH
VGSVNAQVLADQFKSVEELAAATVADLCGVYGIGQEIAQAVHEWFQDPAHQTLIADLKAL
GLQLAAAIATAPTTGQSLAGKRFVITGTLPSLTREAAKTLIQQYGGQVSESVSRQTDYLV
VGEKAGSKLRRAQELGIPCINETELIEMCR
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggtctcgaaggaacccccgatgacgacagcagccgaacggattcaacaactgcggcac
ctgctccagcgggcgagctacgcctactatgccctcgatcagccgatcatggaagatgaa
gtctatgaccagctctatcgcgaactgcaggaactcgaagcggctcatcctgagtacatc
acccccgacagccctacccagcgggtcggcgaagctcccgtcagtcaatttgagagtgtc
agccatcgcattcccctctatagcctcgaaaatgcctttacctttgccgatatggtggcg
tggcaggaacgctggcagcgctattggcgtagcctacggcgagaggagccaattcccccg
acggaatatgtctgcgaactcaaaatggatggcgtggcccttgctttgacctatgaaaac
gggttattggtgcggggggcaactcggggcgatggccaacgcggtgaggatattaccagc
aatgtgcgcacgattcgcaccattcccctgcggctagctatcgagaacccaccaccaatc
gttgaagttcgtggggaagcttttttgcctttggcgcgattccatcaactcaaccaagaa
cgccaagcccaaggagaagctccctttgctaatccccgtaatgccgccgccggtactctc
cgtcaactggatccgcgcattgttgcccaacgccaactggacttctttgcctatgcgctg
catttacctgaagggggtagcgttccttgggatgagaaccaagcaggggaaccccaatcg
cagcggcaagtgctcaatgcgctgcaacgccttggctttcgggtcaatccccacaatgcc
gactgccctgacctagaggcggtgaaagcctactacgaccactggcaaaccgcccgccac
caactgccttatctgaccgatggcattgtggtcaagctcaatgatttaacgctgcaacag
acccttgggtttacgcaaaagtttccccgcggctgtgttgcttggaagtacgaaccagag
caggccattactgatgtggtggccattaccattcaagtgggacgcacgggtgcgctcacc
ccagtcgctgaactggtgccagtgcaattagcgggtaccacggtatcacgggcaacgctg
cacaatgcagactacattgccgaattggatttgcacattggcgataaggtggtgatccac
aaagccggcgaaatcattccagagattgtgcgggtctttcccgaattgcgatcgccaacg
gctcaaccctttacgatgcccaccgtgtgtcctgaatgtcatcagccggtggtgcgccct
gccaacgaagcggtgagtcgctgtgtcaatccgcggtgtccggcgatcgtgcgcggccaa
atcctccactgggcaagtcgggatgccttggatattcaagggttaggggaaaagctagta
cagcaattggtggccaaggagttggtgcacactccggcggatctctatcgcctgacggca
gcacaactgttgcgcctcgagcgcatgggtcaaaagtccgctgctaaattgttgcaggcg
atcgccgactcgaaagaacaaccgtggccacgggtgctctatggcctaggcatccgccat
gtggggagtgtcaatgcccaagtgcttgccgatcaattcaagtctgttgaggagctggcc
gctgctaccgtcgccgatctgtgtggggtctatggcattggtcaggaaattgcccaagcg
gttcacgagtggttccaagacccagcgcaccaaaccctcattgctgatctcaaagccttg
gggctacaactggcggcggcgatcgccactgcaccaacgactggacaatcccttgcgggc
aaacgttttgtgattacaggcaccctgcccagcctcacccgtgaagcagccaaaacgctg
atccagcaatatggcggtcaagtgagtgagagtgtcagtcggcaaacggattatctagtg
gtgggcgaaaaagcggggagtaaactgcgacgcgctcaagaattgggcatcccctgcatc
aatgaaacagaacttatagaaatgtgtcgttag
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integrated database retrieval system
