Thermoanaerobacter sp. RKWS2: OEI98_000684
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Entry
OEI98_000684 CDS
T10300
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
thez Thermoanaerobacter sp. RKWS2
Pathway
thez03030
DNA replication
thez03410
Base excision repair
thez03420
Nucleotide excision repair
thez03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
thez00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OEI98_000684 (ligA)
03410 Base excision repair
OEI98_000684 (ligA)
03420 Nucleotide excision repair
OEI98_000684 (ligA)
03430 Mismatch repair
OEI98_000684 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thez03032
]
OEI98_000684 (ligA)
03400 DNA repair and recombination proteins [BR:
thez03400
]
OEI98_000684 (ligA)
Enzymes [BR:
thez01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OEI98_000684 (ligA)
DNA replication proteins [BR:
thez03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OEI98_000684 (ligA)
DNA repair and recombination proteins [BR:
thez03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OEI98_000684 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OEI98_000684 (ligA)
MMR (mismatch excision repair)
DNA ligase
OEI98_000684 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OEI98_000684 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
HHH
RNA_ligase
PTCB-BRCT
BRCT_2
HHH_8
HHH_3
CoA_binding_2
Cdd1
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
UZQ83597
LinkDB
All DBs
Position
685150..687138
Genome browser
AA seq
662 aa
AA seq
DB search
MEPKERIKELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPELKTPDSPSQR
VGGEPLKEFEPFTHVVPMLSLANAFSEGELRDFDRRVREAVGDVEYVVELKIDGLSVELI
YENGIFTVGSTRGDGIVGENVTQNLKTIKSIPLRLKDDVSLVVRGEVFMPRTSFEKLNEE
REKLGESLFANPRNAAAGSLRQLDPKVTAKRDLDIFIFNLQKIEGRKFKTHIETLEFLKE
QGFKVIPIHKKCSNIDEVIKEIEEIRNLRDKLPYDIDGAVVKVNELEKREILGQTAKDPR
WAIAFKYPAERKKTKVLDIIVQVGRTGALTPTAILEPVTISGSVVSRATLHNEDYIKEKD
IRIGDTVIVQKAGEIIPEVVEVVKEERTGQEREFVMPDRCPECGALAVRLPGEAIRRCTG
LNCPAQLLRGIIHFASKDAMDIEGLGPAIINQLLSKGLIHNIADLYYLKYEDLIQLERMG
DKSVKNLLNAIEESKTRDLDRLLFGLGINLIGSKAAQVIAEHFKTMDNIMKAKFEDFTQL
PDIGPKMARSIVSFFAEKQNVEIIEKLKKAGVNMKKLSKGKVSNIFEGKTFVLTGALESY
TREEATRMIEERGGKVTNSVSKKTDYVLVGKDPGSKLKKAQELGIKIIDEKQFEEMLKGE
NI
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atggagccaaaagaaaggataaaggaattgagagaaaaaataaattatcacaattacaga
tattacgttttggaccaaccagagatttcagactatgagtacgacatgctgatgagagaa
cttatagaattagaagaaaaatatccagagcttaaaactccagactctccatcccaaaga
gtaggtggggagcctttaaaagaatttgagccttttacccatgtagttccaatgttaagt
ttggctaatgctttttctgagggagaacttagagactttgacagaagagtaagagaggca
gtgggagatgtagagtacgtagtagaattaaaaattgacggtttatctgtggaactaatt
tatgaaaatggcatatttactgtaggttctacaagaggagacgggatcgtaggagaaaat
gtcacacaaaatttaaagactataaagtcaattcctttaaggcttaaggatgatgtgagc
cttgttgtaagaggagaggtcttcatgccccgcacttcttttgaaaaattaaatgaggag
agagaaaaattaggggaaagcctttttgcaaatcccagaaatgctgcagcaggttcttta
aggcaattagatcctaaagtgacggcgaaaagagatttagacatttttatttttaacctt
cagaagattgagggtagaaaatttaaaactcacatagagacattagaatttttgaaagaa
caaggatttaaagtaataccaattcataaaaaatgtagcaatatagatgaagtaataaaa
gaaatagaagagataagaaacttacgagataagctgccttacgacattgatggagcagtt
gtaaaagtaaatgaacttgaaaagagagaaattttaggacagactgcaaaagaccccaga
tgggctattgcttttaaatatcctgcagagaggaaaaagacaaaagtcttggatataata
gttcaagtaggaaggactggagctcttactcctacagctatattagagcctgtaactatt
tcaggttcagttgtgagccgagctacacttcataatgaagattacataaaagagaaagac
ataaggataggagatacggtaatagttcaaaaagcgggagaaatcattcctgaagtagta
gaagtggtaaaagaagagaggactggacaagaaagagagtttgtaatgccagatagatgc
cctgaatgcggtgctttagctgtgaggcttccgggggaggctataaggcgttgcacaggt
ctaaattgtcctgcacagcttctaagaggcattatccactttgcttcaaaagatgcaatg
gatatagaaggattggggccagctataataaatcagcttttgtcaaaaggtctaattcac
aacatagcagatttgtattatcttaaatacgaagatttaatacaattagaaagaatgggg
gacaaatctgttaaaaatttattaaatgctattgaagaaagcaaaacaagagatttagat
agattgctctttggcttgggtataaacttaataggcagtaaagctgcccaagtgattgct
gagcattttaagacaatggacaatatcatgaaggcaaaatttgaagactttacacagttg
cctgacataggacctaagatggcaagaagcatagtttccttttttgcagaaaaacaaaat
gtagagataattgaaaaacttaaaaaggctggagtaaacatgaaaaaactttcaaaagga
aaagtaagcaacatatttgaagggaaaacttttgttttgacaggagcgttggaaagttac
acgagagaagaagctaccagaatgattgaagaaagaggtggaaaagttacaaattcagta
agtaaaaaaacagactatgtattagtaggtaaagatcctggttctaaacttaaaaaagcc
caagaattaggaataaagataattgatgaaaaacaatttgaagaaatgctaaaaggtgaa
aatatttaa
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