Thiomonas arsenitoxydans: THI_1898
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Entry
THI_1898 CDS
T02347
Symbol
ligA
Name
(GenBank) DNA ligase (Polydeoxyribonucleotide synthase [NAD+])
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
thi
Thiomonas arsenitoxydans
Pathway
thi03030
DNA replication
thi03410
Base excision repair
thi03420
Nucleotide excision repair
thi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
thi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
THI_1898 (ligA)
03410 Base excision repair
THI_1898 (ligA)
03420 Nucleotide excision repair
THI_1898 (ligA)
03430 Mismatch repair
THI_1898 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thi03032
]
THI_1898 (ligA)
03400 DNA repair and recombination proteins [BR:
thi03400
]
THI_1898 (ligA)
Enzymes [BR:
thi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
THI_1898 (ligA)
DNA replication proteins [BR:
thi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
THI_1898 (ligA)
DNA repair and recombination proteins [BR:
thi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
THI_1898 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
THI_1898 (ligA)
MMR (mismatch excision repair)
DNA ligase
THI_1898 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
THI_1898 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
CAZ88563
UniProt:
D6CTE4
LinkDB
All DBs
Position
complement(1875231..1877291)
Genome browser
AA seq
686 aa
AA seq
DB search
MTQPDLFAQPAERATQLRAEIARLDHAYYVLDAPLAPDADYDALFRELQQIEADHPELRT
PDSPTQRVGGAPLPEFAPVRHAVPMLSIQTETDTTPEGAAAFDQRVRNRLGLSADDPPVN
YCAELKFDGLAISLRYEHGQLVQAATRGDGETGEDVTQNVRTIRSVPLQLRGNAPAVLEV
RGEVLMKRADFERYNARQRDKGLPTLVNPRNGAAGSIRQLDPAIAAQRPLAFYAYGWGEI
AGWAQQPDTHHAMLDALETFGLPVAPQRVHGPGAQTLIDFHARIAAARDSLPFDIDGVVY
KVDSLALQRELGFRNREPVWAVAHKYPAQERSTKVIGIDIQVGRTGKLTPVAKLEPVFVG
GVTVTNATLHNEDEVRRKDVRVGDTVIVRRAGDVIPEVVSVVLSARPADVGEPFDLYQRL
GGQCPVCGSAIVREAGEADWRCTGGLFCAAQRKQAILHYASRRAMDIEGLGEKLVDQLVD
AGIVRVLPDLYRLGLLKLAALDRMAEKSAANLLQALQASKTTTLARFLYALGIRHVGEAT
AKDLARHFGGLDAILDAPLEQLLEVPDVGPVVAQSIRTFFDQPHNREVVEQLRACGVHWS
EAAPDRDAPKPLAGKTLVLTGTLPTLSREEAKARIEAAGGKVVGSVSKKTDYVVAGAEAG
SKLAKAQELGVTVLDEAELLKLLADS
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgacccagcccgatcttttcgcgcagcccgccgagcgcgcgacgcaattgcgcgccgaa
atcgcccgcctcgatcacgcctactacgtgctcgacgccccgctggcgcccgatgccgac
tacgacgcgctgtttcgggagttgcagcaaatcgaggccgatcatcccgagctgcgcacc
cccgactcgccgacccagcgcgtgggcggtgcgcccctgcccgagttcgccccggtgcgg
cacgccgtgcccatgctgtccatccaaaccgaaaccgacaccacgcccgaaggcgcggcg
gctttcgaccagcgggtgcgcaaccgcctcggcctgagcgccgacgatccgcccgtgaac
tactgcgccgaactgaagttcgacggcctggccatcagcctgcgctacgagcacggccag
ctggtgcaggcggccacccgtggcgatggcgaaaccggcgaagacgtcacgcagaacgtg
cgcaccatacgcagcgtgccgctgcaattgcgcggcaacgcaccggcggtgctagaagtg
cgcggcgaagtcctgatgaaacgcgccgacttcgagcgctacaacgcccgccagcgcgac
aagggcctgcccaccctggtcaacccgcgcaacggcgcggcgggcagcattcgccagctc
gacccggccatcgccgcacaacgcccgctggccttctacgcctacggctggggcgagatt
gccggctgggcgcagcagcccgacacgcatcacgccatgctagatgccttggagaccttc
ggcctgcccgtcgcgccgcagcgcgtgcatggccccggcgcgcaaaccctcatcgacttc
cacgcccgcatcgccgccgcgcgcgacagcctgcccttcgacatcgacggcgtggtctac
aaggtcgatagtctcgctctgcagcgcgaactgggctttcgcaaccgcgagccggtgtgg
gccgtggcgcacaaataccccgcgcaggaacgcagcaccaaggtcatcggcatcgacatt
caggtcggccgcaccggcaagctcaccccggtcgccaagctcgagccggtgttcgtcggc
ggcgtgaccgtgaccaacgccaccctgcacaacgaggacgaagtgcgccgcaaagacgtg
cgcgtcggcgacaccgttatcgtgcgccgcgcgggagacgtgattcccgaagtcgtcagc
gtggtgctgagcgcccgcccggccgatgtcggcgaaccgttcgacctctaccagcgcctc
ggcggccagtgccccgtctgcggctcggccatcgtgcgcgaagccggcgaggccgactgg
cgctgcaccggcggcctgttctgcgccgcgcagcgcaagcaggccatcctgcactacgcc
agccgccgggcgatggacatcgaggggctgggcgaaaagctggtcgatcagctggtggac
gcaggtatcgtgcgcgtgctgcccgatctgtaccgcctcggcctgctcaagctcgccgca
ctcgaccgcatggccgagaaaagcgcggccaatctgctgcaggcgcttcaggcgagcaag
accaccaccctggcgcgttttctctacgccctgggcatccgccacgtcggcgaggccacg
gccaaagatctggcgcgccacttcggcgggctcgacgccattcttgacgcgcccttggaa
cagttgctcgaagtgcccgatgtcggccccgtggtggcgcaaagcatccgcaccttcttc
gaccagccgcacaaccgcgaagtggtggaacaactgcgcgcttgcggtgtgcattggagc
gaggccgcgcccgaccgcgacgcccccaaaccgctcgcaggcaagacgctggtgctcacc
ggcaccctgcccaccctcagccgggaggaggccaaggcccgcatcgaagcggccggaggc
aaagtggtcggctcggtctcgaaaaagaccgattacgtggtcgccggcgccgaggccggg
agcaaactcgcgaaggcgcaggaactcggcgtaaccgtgctcgacgaagcggagctgctg
aagttgctggctgattcttaa
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