Thiohalobacter sp. COW1: TspCOW1_08930
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Entry
TspCOW1_08930 CDS
T08363
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
thic
Thiohalobacter sp. COW1
Pathway
thic03030
DNA replication
thic03410
Base excision repair
thic03420
Nucleotide excision repair
thic03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
thic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TspCOW1_08930 (ligA)
03410 Base excision repair
TspCOW1_08930 (ligA)
03420 Nucleotide excision repair
TspCOW1_08930 (ligA)
03430 Mismatch repair
TspCOW1_08930 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thic03032
]
TspCOW1_08930 (ligA)
03400 DNA repair and recombination proteins [BR:
thic03400
]
TspCOW1_08930 (ligA)
Enzymes [BR:
thic01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
TspCOW1_08930 (ligA)
DNA replication proteins [BR:
thic03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TspCOW1_08930 (ligA)
DNA repair and recombination proteins [BR:
thic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
TspCOW1_08930 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TspCOW1_08930 (ligA)
MMR (mismatch excision repair)
DNA ligase
TspCOW1_08930 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TspCOW1_08930 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
Nlig-Ia
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
BCO30790
LinkDB
All DBs
Position
complement(957856..959889)
Genome browser
AA seq
677 aa
AA seq
DB search
MSASNKLRERVERLREQIRHHNYLYYALDAPEISDAEYDALLRELQELESEHPELVTADS
PTQRVGAEPVAAFGTVRHELPMLSLDNAFSDQELEDFDRRIHERLKTEEAIEYAAEPKLD
GLAVSLLYEKGRLVRGATRGDGATGEDITANVRTIASIPLKLVGRDYPERLEVRGEVYMT
HAGFRRLNEAAEREGGKTFVNPRNAAAGSLRQLDPKVTAKRPLEFFCYGAGRVEGAELPD
RHIDVLEQLKAWGQRIYPEIRRVKGLDGCHEYYQDMERRRESLDFDIDGVVFKVDRRDLQ
ERLGFVSRAPRWAIARKFPAQEVNTVLREVEWQVGRTGVLTPVARLEPVFVGGVTVTNAT
LHNPDEIERKDIRLGDTVVVRRAGDVIPQVVAVVKARRPRGAKRISLPKRCPVCHSDVVR
DEGAAALRCSGGLHCPAQRKAGLIHFASRRAMDIDGLGDKLIEQLVERDLVQDAADLYAL
TQAQLAGLDRMAEKSAQNLIQALDRSKTVSLPRFIHALGIPEVGEATAKGLAAHFGSLDG
LMEADEAALQEVPDVGPVVAREIATFFNQKHNRQVIDKLRRHGIEPPAQKIKRRAELPIK
GQTWVLTGALESMTRDQAKERLEALGAKVTGSVSKKTDYVVAGSEAGSKLTKAEQLGVEV
LAEAAFLKRLEELEQGR
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcctcgaacaagctgcgggaacgggtcgagcggctgcgcgagcagattcgtcac
cacaactatctctactatgccctcgacgcccccgagatctctgacgccgaatacgacgct
ctcctgcgcgaactgcaggaactggagtccgaacaccccgaactggtcaccgcggattcg
cccacccagcgggtcggcgccgaaccggtggccgccttcggcacggtgcgccacgaactg
cccatgctgtcgttggacaacgccttctccgaccaggaactcgaggacttcgatcgccgc
atccatgagcgcctgaaaaccgaggaggcgatcgaatacgccgccgagcccaagctggac
gggctggccgtgagcctgctgtacgaaaagggccgtctggtgcgcggcgcgacccgcggc
gacggcgccaccggcgaggacatcaccgccaacgtgcgcaccatcgcctccatccccctg
aagctggtcggcagggattatccggaacgcctggaggtacggggcgaggtctacatgacc
cacgccggcttcaggcggctcaacgaagcggcggaacgggaaggcggcaagaccttcgtc
aacccccgcaatgccgcggccggcagcctgcgccagctcgatccgaaggtcacggcgaag
cggccgctggaattcttctgctatggcgccggacgggtcgagggtgccgaactgcccgac
cgccacatcgatgtgctggagcagctgaaggcctggggtcagcgcatctatcccgagatc
cgccgggtcaaggggctggatggctgtcacgagtactatcaggatatggagcgccggcgc
gaatccctggacttcgatatcgacggcgtcgtgttcaaggtcgatcgccgcgacctgcag
gaacggctcggtttcgtttcccgcgccccgcgctgggccattgcccgcaagttcccggcc
caggaggtcaacactgtgctgcgcgaggtggaatggcaggtcgggcgcaccggcgtactg
acgccggtggcgcggctggagccggtattcgtcggcggggtgacggtcaccaacgccacc
ctgcacaacccggacgagatcgagcgcaaggatatccgcctgggcgataccgtggtggtg
cgtcgcgccggtgacgtgattccgcaggtggttgccgtggtcaaggccagacgccccagg
ggtgcgaagcgcatcagcctgccgaagcgatgccctgtgtgtcactccgatgtggtgcgc
gacgagggcgccgccgccctgcgctgcagtggcggactgcattgcccggcccagcgcaag
gccggactgatccacttcgcctcgcgccgcgccatggacatcgacggcctgggcgacaaa
ctgatcgagcagctggtcgagcgcgacctggtgcaggatgccgccgatctgtatgcgctt
acacaggcgcagctcgccggcctggatcgcatggccgagaagtcggcgcagaacctgatc
caggccctggacaggagcaagacggtctcgttgccgcgcttcatccatgcactgggtatc
ccagaggtcggagaagccaccgccaagggcctggccgcgcacttcggcagtctggatggc
ttgatggaggccgacgaagcggcactgcaggaggtgccggatgtcggcccggtggtggcg
cgcgagatcgccaccttcttcaaccagaagcataaccgccaggtgatcgacaaactgcgc
cgccacgggatcgaaccgccggcgcagaagatcaagcgccgggcagaactgccgatcaag
gggcagacctgggtgttgaccggcgcgctcgagtccatgacccgtgaccaggcgaaggag
cggctggaggcgctgggcgcgaaggtgaccggcagcgtgtcgaagaaaaccgactatgtc
gtcgccggcagcgaggcgggctccaaactcacgaaggccgagcagttgggggtcgaggtg
ctggctgaggccgccttcctgaaacggctggaggaactggaacagggcaggtga
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integrated database retrieval system
