Thiohalobacter sp. COW1: TspCOW1_17180
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Entry
TspCOW1_17180 CDS
T08363
Name
(GenBank) MexH family multidrug efflux RND transporter periplasmic adaptor subunit
KO
K03585
membrane fusion protein, multidrug efflux system
Organism
thic
Thiohalobacter sp. COW1
Pathway
thic01501
beta-Lactam resistance
thic01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
thic00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
TspCOW1_17180
01503 Cationic antimicrobial peptide (CAMP) resistance
TspCOW1_17180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
thic03036
]
TspCOW1_17180
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
thic02000
]
TspCOW1_17180
01504 Antimicrobial resistance genes [BR:
thic01504
]
TspCOW1_17180
Chromosome and associated proteins [BR:
thic03036
]
Prokaryotic type
Chromosome partitioning proteins
Divisome proteins
TspCOW1_17180
Transporters [BR:
thic02000
]
Other transporters
Accessory factors involved in transport [TC:
8
]
TspCOW1_17180
Antimicrobial resistance genes [BR:
thic01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
TspCOW1_17180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-barrel_RND_2
HH_MFP_RND
YknX_C
HH_AprE
HH_CzcB
HH_EMRA
Beta-barrel_YknX
BSH_YknX
BSH_CzcB
RND-MFP_C
Motif
Other DBs
NCBI-ProteinID:
BCO31615
LinkDB
All DBs
Position
complement(1862464..1863648)
Genome browser
AA seq
394 aa
AA seq
DB search
MSLKRRIFPLLLLLAAAWLAVMITQRLLPGDEPAEARRDGRGPVPVEVAPIEQGPIALRR
TFTGSLDANAEFVVASKIEGRIEEIGVRLADSVTRGQVVARLEAAEYLQEVAQAEADLAV
AQANLTEARSQLALAERELKRLEQLRQRGIGSESELDVARAGQQARQAQVEVSRAQVTRA
EAALEMARIRLGYTRVTADWSGGSDTRQVAERFLDEGETVAANAPLLRIVELDPLIAVFH
VPERDYARLQPGQRAELYTDAWPGEAFGGEIARIAPVFRANARQARVELRIDNHGQRLKP
GMFARIDLVLERVGETVIVPEAALVRRDGGDGVFRVTADRQAVTWVPVQPGIREAGRVQV
EGLDPNGKVVVLGQQLLDDGSAIRIADDSGVVSH
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atgtccctgaaacgccgtatattcccgcttctgctgctgctggcggcggcctggctggcc
gtgatgatcacccaacgcttgctgccgggtgatgagcctgccgaggcccggcgcgacggg
cggggaccggtgccggtcgaggtggccccgatcgagcagggcccgatcgccctgcgccgg
accttcaccgggagcctggatgccaatgccgagttcgtcgtggcatccaagatcgagggc
cggatcgaggaaatcggggtgaggctcgccgacagcgtcacccgcggccaggtggtggcg
cggctggaggcggccgagtacctgcaggaggtggcccaggccgaggccgatctggcggtg
gcgcaggccaacctgaccgaggcacgcagccagctcgcgctggccgagcgtgagttgaag
cggctggagcagctgcgtcagcgcggcatcggttcggaatcggaactggacgtggcccgc
gccgggcagcaggcccgccaggcgcaggtggaggtcagccgggcacaggtcacccgggcc
gaggcggcgctggagatggcgcgtatccgcctgggctacacccgggtcacggccgactgg
agcggcggcagcgacacgcgtcaggtcgcggaacgtttcctggacgagggtgagacggtg
gccgccaatgccccgctgctgcgcatcgtggaactggatccgctgattgcggtgttccat
gtgcccgagcgcgactatgcccggctgcagcccggccagcgggccgagttgtacaccgat
gcctggcccggcgaggccttcggcggcgagatcgcgcgcatcgccccggtgttccgggcc
aatgcccgtcaggcgcgggtggaactgcgtatcgacaatcacgggcagcgcctcaagccg
ggcatgttcgcgcgtatcgacctggtgctggaacgggtcggggagactgtcatcgtgccg
gaggccgcgctggtccggcgtgacggcggggatggggtgttccgggtcacggccgacagg
caggcggtgacctgggtcccggtgcagccgggcatccgcgaggccggccgggtgcaggtc
gagggtctggatccgaacggaaaagtcgtggtgctgggccagcagctgctcgatgacggc
agcgccatccgcatcgctgacgacagcggagtggtttctcattga
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