Thiomicrorhabdus sediminis: FE785_05655
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Entry
FE785_05655 CDS
T05983
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
thig
Thiomicrorhabdus sediminis
Pathway
thig03030
DNA replication
thig03410
Base excision repair
thig03420
Nucleotide excision repair
thig03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
thig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FE785_05655 (ligA)
03410 Base excision repair
FE785_05655 (ligA)
03420 Nucleotide excision repair
FE785_05655 (ligA)
03430 Mismatch repair
FE785_05655 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thig03032
]
FE785_05655 (ligA)
03400 DNA repair and recombination proteins [BR:
thig03400
]
FE785_05655 (ligA)
Enzymes [BR:
thig01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FE785_05655 (ligA)
DNA replication proteins [BR:
thig03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FE785_05655 (ligA)
DNA repair and recombination proteins [BR:
thig03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FE785_05655 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FE785_05655 (ligA)
MMR (mismatch excision repair)
DNA ligase
FE785_05655 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FE785_05655 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
Nlig-Ia
Zn_ribbon_PADR1
YhfH
VMAP-M8
Motif
Other DBs
NCBI-ProteinID:
QCU90147
UniProt:
A0A4P9K7B9
LinkDB
All DBs
Position
complement(1229122..1231161)
Genome browser
AA seq
679 aa
AA seq
DB search
MSQSIDHLSQAQQQQLLDDLKQEIAKLNHAYYVLDEPLASDAYYDELYQRLLTIEKLHPE
WVSKDSPSQRVGDKPLAHFNSVTHAVPMYSLDNAFSQDDLQDFARRINDRLNNEQPLAFS
AEPKMDGLAINIRYENGELIQATTRGDGTVGEDVTHNIRTMRCVPLKLWGRGWPQVLEVR
GEVFMSKKTFNALNEIQMQNQQKVFANPRNAAAGTLRQLDPRIAAKRNLSLYLYGWGEIS
DDWQQPSEYEKTILSFAEWGLPINPDSRVVSGTKGMSDYYDELLAKRNDLPYEIDGIVYK
VNDLTLYSQLGFTAKAPRWAIARKFPAQEVWTELLGIDIQVGRTGALTPVARLKPVSVGG
VVVSNATLHNQDEIDRKDVCIGDTVIVRRAGDVIPEVVGPVLAQRPVQITRFVMPEHCPE
CGSDVIKEQDKAVYRCTGGLFCPAQRKRALQHFVSRKAMDIVGLGDKLIDQLIDLSLIKH
PDDLYKLDIETLAELDRMAIKSAQNIVAAIEASKQTTLARFIFALGIPEVGEVTAKNLAN
HFITLDAIKAASIEQLLAVADIGEIVAQHIVEFFMQPHNLEVIDGLLAAGIEWPTPEVVE
QQDSAFSGKVVVLTGSLQQLTRTDAKQKLEALGAKVTGSISAKTDYLIAGEKAGSKLGKA
ESLGVTVLSEAQWLEMIGE
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcaatccattgatcatctcagccaagctcaacaacagcaattattggacgattta
aaacaagaaatcgccaagcttaaccatgcgtattatgtgctggatgagccacttgctagc
gatgcctattatgatgagctctaccagcgcttattgacgattgagaagctgcatccggaa
tgggttagcaaggactcgccaagccagcgtgtcggtgacaagccgttggctcacttcaat
agcgtgactcatgcggtacctatgtactcactggataacgcctttagtcaggatgatctg
caagattttgcccgtcgaattaatgatcgtttgaataatgaacagcctctggcgttttct
gccgaaccgaaaatggacggtttggcaatcaatatccgttatgaaaacggcgagctgatt
caggcgaccactcgaggcgacggtactgtcggtgaggatgtcactcataatatccgcacc
atgcggtgcgttcctttaaagctttgggggagaggctggcctcaggtgctcgaagtgcgc
ggtgaagtcttcatgtcgaaaaagacgtttaatgccttgaatgagattcaaatgcaaaat
cagcagaaggtttttgccaaccctcgcaatgcggcggcggggaccctgcgccaacttgat
cctcgaattgccgcgaaacgcaatctaagcctttatctttatggttggggtgagatcagt
gacgattggcagcagccctccgagtatgaaaaaacgattttaagttttgccgaatggggg
ttgccgatcaatccggacagtcgtgtggtatccggcactaaaggcatgtcagattattac
gatgagttgttggccaagcgtaatgatttaccttatgagatcgacggtattgtctacaaa
gtcaatgatttaacgctgtattctcaattgggtttcaccgccaaagcaccgcgttgggct
attgctagaaaatttcccgcgcaggaggtctggacggagttgctcggcattgatattcag
gtcggacgcaccggcgccttgacaccggttgcccgtttgaaaccggtatctgtcggtggt
gtggttgtctctaatgccacgctgcacaatcaagatgaaatcgatcgtaaggatgtctgt
attggtgatacggtaattgtccgccgagcgggcgatgtaatccctgaagtggtcggaccg
gtgctggcacaacgcccagtgcagataacccgttttgtgatgcctgagcattgcccggaa
tgcggctcggatgtcattaaagagcaagataaggcggtttatcgctgcactggagggctt
ttctgtccggctcagcgtaagcgcgctttacagcattttgtctcgcgtaaggcgatggat
atcgtcggtctgggtgataaactgattgatcaattgattgatctgtctttgattaaacac
ccggatgatctttataagctcgatattgaaaccttggccgaattggatcgtatggcgatc
aaatcggcgcaaaatatcgtagctgccatagaagcatcaaagcagaccaccttagcccgt
tttattttcgctttgggaattccagaagtaggcgaggttaccgctaaaaatctggccaat
cactttatcactttggatgctattaaagccgccagtatcgagcagctgctagcggttgcc
gatattggcgagattgtcgcccagcatattgtcgagttttttatgcaaccgcacaacttg
gaagtaatcgatggtttgcttgccgccggtattgagtggccgacgccagaagttgtcgaa
cagcaggactctgcttttagtggtaaggtagtggtgttaaccggcagcctacaacaatta
acaagaactgatgccaagcaaaagcttgaggcattgggtgccaaggtaacgggtagcatt
tcggcgaaaaccgactatctgattgccggagaaaaagccggttccaagcttggtaaagcg
gaatcgctcggtgtcacggtgcttagtgaagcacagtggctggaaatgattggagagtaa
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integrated database retrieval system
