Thiomicrospira sp. S5: AYJ59_07050
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Entry
AYJ59_07050 CDS
T05796
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
thio
Thiomicrospira sp. S5
Pathway
thio03030
DNA replication
thio03410
Base excision repair
thio03420
Nucleotide excision repair
thio03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
thio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AYJ59_07050 (ligA)
03410 Base excision repair
AYJ59_07050 (ligA)
03420 Nucleotide excision repair
AYJ59_07050 (ligA)
03430 Mismatch repair
AYJ59_07050 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thio03032
]
AYJ59_07050 (ligA)
03400 DNA repair and recombination proteins [BR:
thio03400
]
AYJ59_07050 (ligA)
Enzymes [BR:
thio01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AYJ59_07050 (ligA)
DNA replication proteins [BR:
thio03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AYJ59_07050 (ligA)
DNA repair and recombination proteins [BR:
thio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AYJ59_07050 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AYJ59_07050 (ligA)
MMR (mismatch excision repair)
DNA ligase
AYJ59_07050 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AYJ59_07050 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
Zn_ribbon_PADR1
Motif
Other DBs
NCBI-ProteinID:
AZR82066
UniProt:
A0A3Q9I5A1
LinkDB
All DBs
Position
1543872..1545890
Genome browser
AA seq
672 aa
AA seq
DB search
MSDRQHYLDLVETLNKHSYQYYVLDDPLISDPQYDVMYQELLTLEADHPDWVVKESPSQR
VGDQPLTEFKTVRHALAMYSLDNAFNDEDLAAFLKRIQEKEPGLAEIDFSAEPKMDGLAI
NIRYENGELVQATTRGDGQVGEDVTHNVRTIQAIPLKLFGQAWPEVVEVRGEVFMSKPAF
DKLNAYQQSIDGKVFANPRNAAAGSLRQLDAKIVAKRQLSFYLYGWGEISDDWPVPERYS
DMIEQLVAWGLPSNPNSEVVRNLDGMLGYYEKILGLRDELPYEIDGIVYKVNRIALQAHL
GFTARAPRWAIARKFPAQEVWTKLLDIEVQVGRTGAITPVARLEPVSVGGVTVSNATLHN
MDEIRRKDVRIGDTVIVRRAGDVIPEVVGPVLAQRPDDTRLFEMPSHCPECGSDVVKEID
KAAYRCTGGLVCPAQRKRSLYHFVSRKAMDIQGLGDKLIDQLVDIGWVKHPDDFYHLTVE
QLATLERMAEKSAQNVVDGIQASRETTLAKFIYSLGIPEVGEVTARNLANYFKDLPSIQQ
ATLEEFIEVDDVGEVVAEHLVNFFKEPHNEEVIQGLLDAGMHWPAPKAADVPVDSPFDGK
VVVLTGTLTEMSRPEAKDWLESLGAKVTGSVSAKTDYVVAGEKAGSKLTKAESLGVAVLD
ESEWLAMMPPRA
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatcgccaacactacctcgacctggttgaaaccctcaataagcacagctatcag
tattacgttctcgatgatcccttgatcagcgacccgcaatacgatgtgatgtatcaagaa
ctcttgacgctcgaagcggatcatccggattgggtggtcaaggaatcgcccagtcagcgg
gtcggtgaccagccgctcaccgaattcaaaaccgtccgccacgcgttggccatgtattcc
ctggacaatgcctttaacgatgaggacttggcggcgtttttgaaacgcattcaggaaaaa
gagccaggcctggcggaaatcgacttttccgccgagccgaaaatggacggtctcgccatc
aatattcgttatgaaaacggtgaactggtgcaagccaccacccgtggcgacggccaggtc
ggcgaggacgtcacccataatgtgcgtaccattcaagccattccgttgaagcttttcggc
caggcctggccggaagtggtggaagtgcgcggcgaagtgttcatgtccaaaccggcattt
gacaaactgaacgcctatcagcaatccattgacggcaaagtgtttgccaaccctcgaaac
gccgccgcgggctctttacgacaactggatgccaaaatcgtcgccaaacgtcagttgagt
ttctacctctatggctggggcgaaatcagcgatgactggccggtaccggaacgttattcg
gacatgattgagcaactggtggcgtggggcttgccatccaacccgaattccgaagtggtt
cgcaacctggacggaatgttgggctactatgaaaaaatattgggcttgcgtgacgaattg
ccgtatgaaatcgatggcattgtctataaagtcaaccgtattgccttgcaagcacacctt
gggttcaccgctcgcgcgcctcgttgggccatcgcgcgcaaattcccggcgcaggaagtc
tggaccaagctcttggatattgaagtgcaggttgggcgtacaggcgccattacgccggta
gcgcgtctggaaccggtttccgtcggcggtgtgaccgtttccaatgccacattgcataat
atggatgaaattcgccgtaaggatgtccgcatcggtgataccgttatcgtgcgccgtgcc
ggtgatgtgattcccgaagtggtggggccggtgttggcacaacgtccggacgacacccgt
ttgtttgaaatgccgagccattgtccggaatgcggttccgatgtggtcaaggaaatcgat
aaagcggcttaccgttgcacgggtggattggtttgtccggcacaacgcaaacgttcgctg
tatcattttgtgtcgcgtaaagccatggatattcagggcttgggtgataaactgattgac
cagctggtcgatatcggttgggtcaaacatccagacgatttttatcatctgacggtcgag
caattggcgacgttggaacgcatggcggaaaaatcggcacagaatgtggtggacggcatt
caagcgtctcgcgaaaccaccttggccaagttcatttacagcttggggattccggaagtc
ggtgaagtcacggcgcggaatttggcaaattatttcaaagatttacccagtattcagcag
gccacgcttgaagaatttattgaggtggatgacgtcggtgaagttgtcgccgaacacctg
gtgaactttttcaaggagccgcataatgaagaagtgattcaaggtttgttggatgccggc
atgcattggccggcaccgaaagccgccgacgtaccggttgattcgccgtttgacggaaag
gtggtggtgttgaccggcactttgaccgaaatgagccgcccggaagccaaagactggctg
gaatcgctgggtgctaaagtcactggcagcgtgtccgccaaaaccgattatgtcgtggcc
ggcgagaaggccggctcgaaattgaccaaagccgaatcgctgggcgtggcggtgctggac
gagtccgaatggctggcaatgatgccgccgcgcgcttaa
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