Tarenaya hassleriana (spider flower): 104805813
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Entry
104805813 CDS
T04125
Name
(RefSeq) 5'-3' exoribonuclease 4
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
thj
Tarenaya hassleriana (spider flower)
Pathway
thj04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
thj00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
104805813
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thj03019
]
104805813
Messenger RNA biogenesis [BR:
thj03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
104805813
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
104805813
NCBI-ProteinID:
XP_010528793
LinkDB
All DBs
Position
Unknown
AA seq
959 aa
AA seq
DB search
MGVPAFYRWLADRYPKSISDVVEEQPTDDGRGGVIPVDITRPNPNGFEFDNLYLDMNGII
HPCFHPEGKPAPATYDDVFKSIFEYIDHLFSLVRPRKLLYMAIDGVAPRAKMNQQRSRRF
RAAKDAAEAEAEEERLKREFDVEGKLLSAKEKTETSDSNVITPGTPFMGVLSVALQYYIQ
TRLNHNPGWRYTKVILSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML
ALATHEVHFSILREVVTFPGQQEKCFACGQVGHFAADCPGKSGNANAAGDIPVYKKKYQF
LNVWVLREYLQYELAIPDPPFEINFERIIDDFVFLCFFVGNDFLPHMPTLEIREGAINLL
MHVYRKEFTAMGGYLTDSGEVLLDRVEHFIQSVAIHEDQIFQKRARIKQAMENNEELKQK
ARRDPSEEPEAPVEDKIKLGEPGYKDRYYAEKFGVTNPEEIQQIKQDLVLKYVEGLCWVC
RYYYQGVCSWQWFYPYHYAPFASDLKNLSDLEITFFIGEPFKPFDQLMGTLPAASSNALP
EGYRKLMTDPSSPILKFYPADFEIDMNGKRFAWQGVAKLPFIEEKLLLSATRKLEETLTE
EEQLRNSVMLDLLYVHPAHPLAQQILEYYRFYHWLPPHERLPWVIDTNASQGMNGFLWLS
ERNGFQTKVDSPVNSLPCLEHNRAVSVTYLNPAKHSHIPQPPRGAIIPDKILTIGDIKPF
PILWHEDNSSRRQQSRDRPQVAGAIAGQMLGEAAHRLIKNTLNIKSSSGSASGLLDPYPY
YRNGPGNSYFTGGRPRPAGPSNYRRGNDDESSHYYYGQYNNGPGVFSGGPRNPSSSNGSL
GFNRNNFRPREQQPQQQNRGIRAGMYHLSIEDNVRSRQPPDNHPNRTQHDNYSKGESVHH
VNPLPSPPTKWINRPGGAGNMDGVYYLQGVASGETNGKTGKKMVYQAKAQQTQMGTTSE
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtgccggcgttttaccggtggctcgccgaccgatatcccaagtccattagcgac
gttgtggaagagcaaccaacggacgacggtcgtggcggcgtaattccggtggatatcacc
agacctaaccctaatgggttcgaattcgataatctctacttggatatgaacggaatcatt
catccttgttttcatcccgagggaaagcctgcacctgcaacatacgatgatgtattcaaa
tcaatattcgagtacattgaccatcttttctctttagtgcgtccgaggaagcttctttat
atggctattgatggggttgctcctagagccaaaatgaatcaacagcgttctcgacgattc
agagctgcgaaagacgcagctgaggctgaagccgaggaagagaggttgaagagagaattt
gatgttgagggaaaattgttgtctgctaaagaaaaaacggaaacctcagattcaaatgtc
attactcctggaaccccatttatgggtgtactgtcagtggctcttcagtattacattcaa
actaggttaaaccataaccctggctggcggtatactaaggttattctttctgattcaaat
gttcctggcgaaggagaacacaagataatgtcatatatccgtctccagcgtaatcttcct
ggcttcgatccaaatactcgccattgtctttatggtctggatgcagacttgataatgcta
gccttagctacacatgaggttcacttctcaatcttaagagaggttgttacttttcctggc
caacaggaaaaatgttttgcatgtggacaagttggtcattttgccgcagattgccctgga
aaatcaggcaatgctaatgcggcaggtgacatacctgtatacaagaagaagtatcagttc
ttgaacgtctgggtgctgcgagaatatctgcaatatgaactggccattccggatcctccc
tttgaaataaactttgagaggattatcgatgactttgtattcctctgcttctttgtcggc
aatgactttcttcctcatatgcctaccttggaaattcgtgagggtgctataaacttactg
atgcatgtatatagaaaggagtttactgctatgggtggttatcttactgattccggtgag
gttttgttagatagagtagaacatttcattcaatctgttgccattcatgaagaccaaatt
tttcagaaaagagcgagaataaaacaggctatggagaacaatgaagaactgaaacaaaaa
gcaagaagagacccttctgaggagccagaagcaccggtggaagacaagattaaactagga
gagccaggatacaaggatagatattatgctgaaaagtttggtgtgaccaatccagaagaa
atccagcaaatcaaacaagacttggtgctgaaatatgtggaaggtttatgctgggtttgc
cgctactattatcagggcgtttgctcttggcaatggttttatccataccattatgctcca
tttgcttcagaccttaagaatctatccgatttggaaatcacatttttcataggagagccc
tttaaaccttttgaccagctcatgggaaccctaccggctgcaagctcaaatgcgctgccg
gaaggataccgaaagttgatgactgatccttcatcaccgatcctcaagttttaccctgct
gattttgagattgacatgaatggcaagcgatttgcctggcagggtgttgccaaactccct
ttcattgaagagaaactattgttatctgctacgaggaagctcgaagaaactttaacggag
gaagaacagcttcgcaatagtgtgatgcttgatttgttatacgtacatcctgctcacccg
ttggcccagcagattctggagtactaccggttctaccattggttgccaccacacgaaaga
cttccgtgggtgattgacacaaatgctagccaagggatgaatgggtttctctggttatct
gaaaggaatggttttcaaactaaagtggattcccctgtcaacagtttgccatgcctcgag
cataaccgagcagtaagtgttacgtatctgaatccagcgaaacatagtcatatcccgcaa
ccacctagaggggcgatcattccagacaagatcttgacgattggagatattaagccattt
cccatattatggcacgaagacaatagtagtcgccgccaacagtcccgagataggccacaa
gtggctggtgctatagcaggtcaaatgttgggagaagcggcacaccgtctcatcaagaac
acccttaacatcaaatcgtcaagtggttcagcttcaggattactagatccatacccatac
taccgaaatggacctggtaatagttactttacaggtggtagaccgagaccagctggcccc
tctaactacagaaggggaaacgacgatgagtcaagccattactattacgggcagtataac
aatggtcctggggtgttcagcggtggtccaagaaatcccagttcctcaaatgggtcactc
ggctttaacaggaataacttcagaccacgagaacaacagccgcaacagcaaaaccgtggc
atcagagccggaatgtaccatctgtcaatagaagacaatgtcagaagtagacaaccaccc
gataatcacccgaacaggacacaacacgacaactattcaaaaggtgagagtgtccatcat
gtcaacccattgccttcgcctcctacgaaatggatcaacaggccagggggagctgggaac
atggatggtgtttactatctgcaaggagttgcatcaggcgaaacaaatgggaaaaccggc
aagaaaatggtttatcaggccaaggcacaacagacgcagatgggaacaacgagcgaatga
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