Tarenaya hassleriana (spider flower): 104815391
Help
Entry
104815391 CDS
T04125
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
thj
Tarenaya hassleriana (spider flower)
Pathway
thj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
thj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104815391
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
thj03041
]
104815391
Spliceosome [BR:
thj03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
104815391
Complex C
U5 SnRNP specific factors
104815391
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
104815391
NCBI-ProteinID:
XP_010542071
LinkDB
All DBs
Position
Unknown
AA seq
985 aa
AA seq
DB search
MDDSLYDEFGNYIGPEIESDRESDEEIEDEELPDKAAEEDGSDGEHDRGAANGWITTIND
VDMENQVVLPEDKKYYPTAEEVYGEDVETLVMDEDEQSLELPIIKPVRDIKFEIGVKDSS
TYVSTQFLIGLMSNPALVRNVALVGHLQHGKTLFMDMLVEQTHHMSTFDVKNEKHMKYTD
TRVDEQERNISIKAIPMSLVLEDSRSKSYLCNIMDAPGHVNFSDEMTAALRLSDGAVLIV
DAAEGVMVNTERAIRHAIQERLPIVVVLNKVDRLITELKLPPRDAYYKLRHTIEVINNHI
TAASTTAGNLQLIDPAAGNVCFASATAGWSFTLQSFAKLYAKIHGVQMDTDKFSSRLWGD
MYFHPDRRVFKRNPPAGGGERSFVQFILEPLYKIYSQVIGEHKKSVETTLAELGVTLSNT
AYKLNVRPLLRLACSSVFGSASGFTDMLVKHIPSPKEAAARKVEHIYTGPKDSSTYDSMV
ECDPDGPLMVNVTKLYPKSDCSVFDAFGRVYSGKIQTGQSVRVLGEGYSPEDEEDMTVKE
VTKLWIYQARYRIPISSAPPGSWVLIEGVDASIMKTATLCNENYDEDIYIFRPLQFNTLP
VVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRE
LYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLDRGLAEDIENGVVS
IDWNRKQLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKNLLNAVKDSI
VQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSGFLMATPR
LMEPVYYVEIQTPIDCVTAIYTVLSRRRGHVTSDVPQPGTPAYIVKAFLPVIESFGFETD
LRYHTQGQAFCVSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSED
VSINKFFDEAMVVELAQQTADFQMI
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atggatgatagcttgtatgacgagtttggtaactacatcggccctgagatcgagtctgac
agggagagtgacgaagaaatagaagacgaagagctcccagacaaggcagcagaggaggat
ggatcagatggcgaacatgatcgtggagctgctaatggctggattacgacaatcaatgat
gttgatatggagaatcaggtggtccttcccgaggataaaaagtactacccgaccgcagaa
gaggtttatggtgaagatgtcgagacattggttatggatgaagatgaacagtctcttgag
ctacccattatcaaaccggtcagagacattaaatttgagatcggggttaaggattcgtct
acttatgtgtcgacacagtttcttattggcctcatgtcaaatcctgcacttgtgaggaat
gttgctcttgtggggcaccttcagcatgggaaaactctctttatggatatgctggtggag
caaacacaccatatgtctacctttgatgtgaaaaacgagaagcacatgaaatatacagac
acaagagttgatgaacaggagagaaatatatcgattaaggcgattcccatgtcccttgtc
cttgaagacagcagatccaaatcatacctgtgtaatatcatggacgccccaggacatgtc
aatttttctgatgaaatgactgctgctttaagactttctgatggtgctgttttgatcgtc
gatgctgctgaaggagtgatggtaaacacagagagggctattcgccatgcgatccaggag
cgtcttcctattgttgttgttttgaacaaggttgacaggctcataactgagctcaaacta
cctccaagggatgcttactacaagctaaggcatacaattgaagtcattaataaccacata
actgctgcttcaactactgctggaaatttacagcttatagacccagcggctggaaatgtt
tgttttgctagtgctactgctggatggtccttcacattgcaatcttttgctaaattgtat
gctaagattcatggggtacagatggatacggataagttttcatcccgtctttggggagat
atgtattttcacccggataggagggtgttcaagaggaatcctccagctggtggtggagaa
aggtcattcgttcagtttattcttgagccactgtacaaaatatatagtcaagtgattggt
gaacataagaagagtgtggagaccacccttgcagaattaggagtcactctcagtaatact
gcttataagctgaatgttcggccattacttaggttagcctgtagctcggtttttggatct
gcatcgggtttcactgatatgctggtaaagcatattccttcccccaaagaagctgcagct
aggaaggttgaacatatatacacggggcccaaggattcttccacatatgattcgatggta
gaatgcgatcctgatggacctctcatggtgaacgtgactaaattgtacccgaaatcagat
tgtagcgtctttgatgcttttggtagggtttatagtggtaagattcaaacagggcaaagt
gtccgtgtactgggagaagggtattcgcctgaggatgaggaagatatgactgtaaaggaa
gtgaccaagttatggatctaccaagcccggtacaggatacctataagcagtgcgcctcct
ggttcttgggttctcattgaaggtgttgatgcatccatcatgaagactgccacattgtgt
aatgaaaactacgacgaagatatctacatattccgcccacttcagttcaatacactccct
gtagtgaagacggccacagagcctttgaatcctagtgagttgcctaaaatggtggaggga
cttaggaaaatcagcaagagctatcctcttgctattaccaaggttgaagaatcgggggag
cacactattctaggcacaggtgagctgtacttggattctatcatgaaggacctgagagag
ctttattcagaagttgaagtaaaggttgcagatccagtggtctcattctgtgagacagtg
gttgaatcttcatcaatgaagtgttttgctgagacaccaaacaagaagaacaaaataact
atgattgcggagccactggatagaggacttgcagaggacattgagaatggtgttgtaagc
attgattggaacagaaaacaactaggtgacttctttaagacaaagtatgactgggattta
cttgcagcacgttccatttgggcatttggccctgacaagcaggggcctaatatcctattg
gatgacaccctaccaactgaggttgacaaaaatttgttgaatgcagtcaaggattcgatt
gttcaagggtttcagtggggtgcaagagaaggacctctttgtgacgagcctatcagaaat
gttaagttcaagatagttgatgcaaggattgctcctgagccgctgcatcggggatctggt
caaatcattcccactgcacgtcgtgtggcatattcaggttttcttatggcaactcccagg
ctaatggagcccgtgtattatgtagagattcaaactccgattgactgtgtaactgcaatc
tacacggtactgtcacgtagacgtgggcatgttacttctgatgttcctcagccgggtacc
cctgcttatatcgtgaaggctttcctacccgtaatagaatcatttgggtttgagacggat
ctgaggtatcacacacagggacaggccttttgcgtatcggtatttgaccattgggccata
gttccaggagaccctcttgacaagagtatcgtgttacgcccacttgaacctgctcctatt
cagcatctcgcccgtgaattcatggtgaagactcgacgtagaaagggaatgagtgaagat
gtgagcatcaacaagttcttcgacgaggccatggtggtggaacttgcccagcagacggct
gatttccaaatgatctga
DBGET
integrated database retrieval system
