Tarenaya hassleriana (spider flower): 104817773
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Entry
104817773 CDS
T04125
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
thj
Tarenaya hassleriana (spider flower)
Pathway
thj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
thj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
104817773
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thj03400
]
104817773
Enzymes [BR:
thj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
104817773
DNA repair and recombination proteins [BR:
thj03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
104817773
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
104817773
NCBI-ProteinID:
XP_010545384
LinkDB
All DBs
Position
Unknown
AA seq
1223 aa
AA seq
DB search
MTEEVKFNVLVSLFNWIQKSKTSAQKRSKFRKFLDTYCKPSDYFAAVRLILPSLDRERGS
YGLKESVLATCLIDALGISRDSPDAVRLVNWRKGGTAKAGANAGNFALISFEVLQRRQGM
ASGGLTIMELNDSLDRLASSENRADKTSVLSTLIQKTNAQEMKWIIMIILKGRTFSCMFS
ECFTSLFGLFLPEIHENSISVAHCFTDLKLGMSEKSIFQEFHPDAEDLFNVTCDLKLVCE
KLRNRHQRHKRQDIEVGKAVRPQLAMRISDVNAAWKKLHGKSVVAECKFDGDRIQIHKNG
TEIHYFSRNFLDHSEYAHAMSDLIVRNIEADKCILDGEMLVWDASLNRFAEFGSNQEIAK
AAREGLDSHRQLCYVAFDVLYVGDTSVIHQSLKERHELLRKVVKPLKGRLEVLVPDGGLN
AHRPSGEPCWSIIAHAADDVEKFFKETVENRDEGIVLKDLDSKWEPGDRSGKWLKLKPEY
IRAGADLDVLIIGGYYGSGRRGGEVAQFLVALAERPEANVFPRRFISFCRVGTGLSDDEL
GSVVSKLKPYFRKNEYPKKVPPSFYQVTNHSKERPDVWIESPEKSIILSVTSDIRTIRSE
VFAAPYSLRFPRIDRVRYDKPWHECLDVQSFVVLVNSSNGTTQKQKDSESTQDKQKVNKS
SRREKKNVPLVPSQFIQTDVSDIKGKSSIFSNMVFYFVNVPSSYSLDALHKMVVENGGKF
SMNLNNSVTHCIAAESSGIKYQAAKRQRDVIHLSWLLDSCSWNKLLPLQPRYFLHLTDAS
RTKLQDEIDEFSDSYYWDLDLEGIKQVLNNARLSDETKAIDYYKKKFCPEKRWSVFFGCG
IYFHPFSQSLRTEEEALLGLTARRLALEVLMGGGEISNSLAHATHIVVLGSSEDHVDFDS
LMKSVDEMEKRLLLKKGLHVVSMQWLEESLQREQKLIEDTYSLRPSNMVESETEESDKPD
QDATEVPSCGSAQTGGRGSSKRAITRPRERPAARTAKRGRSIPNRTQRVQTRRSKQPSKI
GGDETEENESSEESEPLQRNTRGRGSSRTRRTQTLRRGKKPSKIGGDESGENDAFGEKTK
EETAKEQTKTSDETADSQKEDQESLLIRHSAEGEASQDEGSYKSEIEMKDDFVNGENIEG
GSKREKVEIIVDPVQAMLMNMFPSLAPKSAEETSSLITGKPSTSSTNANPSDSNLGTETD
DMPPVKKKKVSYRDVAGELLKDW
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atgacggaggaggtgaaattcaacgttctggtttctctcttcaactggattcagaagagc
aagacctccgctcagaaacggtccaagttccgcaagttcctcgatacctactgcaaacct
tccgactacttcgccgccgtccgactcatccttccatctctcgaccgcgaacgcggaagt
tacggcctcaaggaatccgtactggccacgtgtctcatcgacgcgttgggcatttcccgc
gactcaccggatgctgtccgcctcgtcaactggcggaagggcggcaccgccaaggctggc
gccaacgccggtaactttgccctaatctccttcgaggtgctgcaacgtaggcaaggaatg
gcatcgggtggattgaccatcatggaactgaatgattcgcttgatcgtttggcttccagc
gagaacagagcagacaaaacttctgttctttccactttgattcagaagacaaatgcgcag
gaaatgaagtggatcattatgatcatcctgaaaggcaggactttttcatgcatgttttca
gaatgttttacatccctttttggcctatttcttccagagatacatgagaattcgatttct
gttgctcactgctttacagatttgaagttgggaatgagcgagaagagcatttttcaggag
ttccatccagatgctgaggacttgtttaatgtcacatgtgacttgaaattagtctgcgaa
aagttgaggaatcggcatcagcggcataagcgccaggatatagaagttgggaaggctgtg
cggcctcagttggctatgcgtatcagtgatgtaaatgctgcttggaaaaagctccatggg
aaatctgtggttgctgaatgcaaatttgatggagatcgcatacaaatacataaaaatggc
acagagatacattacttctctaggaacttccttgaccattctgaatatgcacatgcaatg
tcagatcttattgtacgaaatattgaggctgacaaatgtattcttgatggcgagatgttg
gtctgggatgcatctctcaatcgatttgctgagtttggttcgaatcaggaaatagccaag
gcagcaagggagggcctcgacagccacagacagttatgttatgttgcctttgatgttctt
tatgtcggggataccagtgtcatccaccagagcttgaaggaacgacatgaacttctgagg
aaagttgttaaacctttaaaaggccgacttgaagtcttagtacctgatggtggtctcaat
gctcatcgcccttcaggggaaccttgttggtccattattgctcatgctgcagatgacgtt
gagaaattcttcaaagaaactgttgaaaacagagatgaaggaattgtgctgaaagacctg
gattctaaatgggaacccggagatcgtagtggcaagtggttaaagttgaagcctgagtat
attcgggctggtgctgacctagatgttcttattatagggggctattatggctctggacgt
cgtggaggggaggtagcacagtttctggtggccttagctgaacgaccagaggcaaatgta
tttcccaggcgatttatttccttttgcagagttggcactggactttctgatgatgagctt
ggctctgttgtgagcaaattgaagccttatttcaggaaaaatgaatacccaaagaaagtg
cctccgagcttttatcaagtcacaaatcattcaaaagagagaccagatgtttggattgaa
agccctgagaaatcaataatactttcagtcactagtgatatcaggacaataagatctgag
gtgtttgctgcaccttacagcctgagatttcctcgtatcgacagagtaagatatgacaag
ccttggcatgaatgtcttgatgtacagtcttttgtggtgttggtaaattcaagtaatggt
acaacacaaaaacagaaggattctgaaagcacacaggataaacagaaagtcaataaatct
tccaggagggagaaaaagaatgtccctcttgtcccctctcagtttatacaaactgatgtt
tctgatatcaagggcaagagctcaatcttctcaaatatggtattttattttgttaatgtg
ccttcatcctattctcttgatgcattgcacaaaatggtggttgagaatggaggaaagttt
tcaatgaatttaaacaactcagtgactcattgcattgcagctgaaagcagtggaataaaa
tatcaggcagcaaagcgtcaacgagatgttatccatctttcatggttgttagattcttgt
tcatggaataagctgcttcctttgcagccaaggtacttcctccacctcaccgatgcctcg
aggacaaagttgcaggacgaaattgacgaattttctgattcttattattgggatttagac
cttgaaggtatcaaacaggtcttaaacaacgccaggctatctgatgaaacaaaagccatt
gactactacaagaaaaagttttgtccagagaagagatggtccgttttctttggctgcggc
atttacttccaccctttcagtcaatcattgagaactgaagaggaagctctgttgggtctt
acggcaaggaggttggcacttgaggtcttaatgggcggtggagaaattagcaacagtctt
gctcatgcaacacatattgtagtccttggttcatcagaagaccatgtggattttgattct
cttatgaaaagtgttgatgaaatggagaaacgccttcttttgaagaagggtctacatgtt
gttagcatgcagtggctggaggaaagtttgcagagagagcaaaagttgatcgaggacaca
tacagtctgaggcctagcaacatggtggagtctgaaacagaagaatcagataaacctgac
caggatgcaacagaagtgccttcttgtggcagtgcacagactggaggacgaggttcctcc
aaaagggccatcacaaggccaagagaaaggccggctgctcgaacagcaaagagaggaagg
tctattcccaatcgaacacagagggtgcagactcgcagaagcaaacagccttctaagata
ggtggagatgaaacagaggagaatgagtcttctgaagagtcagaaccgttacagagaaac
acgagaggaagaggttcttctagaacccgaagaacacaaacactccgaagaggcaagaag
ccttcgaagataggcggagatgaatccggggaaaatgatgctttcggtgaaaaaacaaag
gaagagactgcaaaggaacaaacaaaaacaagtgatgaaacagccgactcccaaaaagaa
gatcaagaatcattgctcatacgccacagtgctgaaggtgaggcctcacaagatgaggga
agttataagtcagagattgagatgaaagatgatttcgtcaatggcgaaaacatagaggga
ggcagcaaaagagagaaggtggaaatcattgtggatccggtccaagccatgttaatgaac
atgttcccgagccttgctccgaaaagtgcggaggagacttcaagtctgataaccggaaag
ccttcaacttcttccaccaacgcgaacccttcggacagcaacctcggaactgaaacggat
gacatgcccccggtgaagaaaaagaaagtcagttacagagatgtcgccggagaactgctt
aaagactggtga
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