Thermotoga sp. RQ7: TRQ7_04470
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Entry
TRQ7_04470 CDS
T03669
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
thr
Thermotoga sp. RQ7
Pathway
thr03030
DNA replication
thr03410
Base excision repair
thr03420
Nucleotide excision repair
thr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
thr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TRQ7_04470 (ligA)
03410 Base excision repair
TRQ7_04470 (ligA)
03420 Nucleotide excision repair
TRQ7_04470 (ligA)
03430 Mismatch repair
TRQ7_04470 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thr03032
]
TRQ7_04470 (ligA)
03400 DNA repair and recombination proteins [BR:
thr03400
]
TRQ7_04470 (ligA)
Enzymes [BR:
thr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
TRQ7_04470 (ligA)
DNA replication proteins [BR:
thr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TRQ7_04470 (ligA)
DNA repair and recombination proteins [BR:
thr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
TRQ7_04470 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TRQ7_04470 (ligA)
MMR (mismatch excision repair)
DNA ligase
TRQ7_04470 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TRQ7_04470 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
HHH
PTCB-BRCT
HHH_8
5_3_exonuc
HHH_3
RNA_ligase
BRCT_2
UBA_3
UPF0758_N
Motif
Other DBs
NCBI-ProteinID:
AJG40709
UniProt:
A0A0B5KQ24
LinkDB
All DBs
Position
867536..869596
Genome browser
AA seq
686 aa
AA seq
DB search
MRQIPKEVIEEVERLREEIEYHNYRYYVLNDPVITDEEYDRLMRRLIELERMYPELVTPD
SPTQRVGGKVLEGFKTVKHSVPMLSLDNTYNEEEIIEFDKRVKKTLQESEVEYVAELKID
GVSIALRYENGRFVLGATRGDGVEGEDVSENVKTIRSVPLRLRKPLTIEVRGEIYMPVDE
FKRLNEEREEEGLPPFANPRNAAAGTLRQLNTALVASRRLDSFIYYVVHPENYGLKTQWE
ALQFLKEIGFKVNPHSRLCKNIQEVIEYWREWKERKRELDYWVDGVVVKVNRFDFQKVLG
ETSKAPRWAIAFKFPAEQARTRILDVTIQVGRTGVLTPVAELEPVQLAGTIVKRASLHNF
EYIREKDIRIGDYVFVEKAGGIIPQIVKSIPELRTGSEKEIKPPQSCPVCGGKVGKLSPD
EVAIRCLNPHCPAKLKRALRTFVSREALDIEGLGEKIIDRLVDSGLVKDIADIFYLTPFD
LAQLGPGIGQRTIAKILQEIEEAKKRPLHKLITGLGIPMVGQKTAKILAEHFKSLEAIAE
ASYETLKDIPGIGPEIARSIVEYFRNPKTREIIEKLKKAGVKLEEKTVKYDVLKGLTFAV
TGTLKNFTREEIIEFLERLGARVVNSVSKNTDYLIVGENPGSKYEKAKALKVKTMSEEEF
LRFVENRAKLKGYNFDEIMRGWKEWS
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgagacagattccaaaagaggtaatagaggaagtggaaagactgcgcgaggaaatagaa
taccacaactacagatattacgttttgaacgacccagttataaccgatgaggaatacgat
agattgatgagaagactcatagaactggaaagaatgtacccagaactggttactccagac
tcgccgactcagagggtcggggggaaggttctcgagggattcaaaaccgtcaaacactcc
gtacccatgttgagtctggacaacacctacaacgaagaggagatcattgagttcgacaaa
cgtgtcaagaagacgcttcaggagtcggaagtggaatacgttgccgaactgaagatagac
ggtgtttcgatcgctctcaggtacgaaaacggtcgcttcgttctgggagcaacgcgtggg
gacggagtggagggtgaagacgtttccgagaatgtgaaaaccattcgaagtgttccactg
aggttgagaaaacccctcaccattgaggtgagaggggagatttacatgccggtggatgag
ttcaaaagactgaacgaggagagagaagaagaaggacttcctccctttgccaacccaaga
aacgcggcggcggggactctccgtcagctgaacaccgctctcgtggcttcgagaagactc
gattctttcatctattacgttgttcatcccgaaaattacggcctcaaaactcagtgggaa
gcgctccagtttttgaaagagataggatttaaagtgaacccgcattcaagactgtgcaag
aacatacaggaggtgatcgagtactggagagagtggaaagaaagaaagagggaactggac
tactgggttgatggagttgtggtgaaggtgaacaggttcgatttccagaaagttctgggg
gagacttccaaggcaccaaggtgggcgatcgctttcaaattccctgcggagcaggccaga
acgaggatcctcgatgtcacgatacaggttggtcgaacgggtgttctgacaccggtggca
gaactcgaacccgtccaacttgcaggaactatcgtgaaaagggcctcccttcacaatttc
gagtatataagagaaaaggacatacgaataggtgactacgtattcgttgaaaaggcaggg
ggaatcattccccaaatagtgaaatcaataccagagttgcgaactggcagcgaaaaggag
ataaagcctccccagagttgtccggtttgtggtggaaaagtgggaaaactctctcctgat
gaggttgcaatcagatgtctgaatcctcactgcccggcgaagctgaagagggcactgagg
acgtttgtgtcccgggaggcgctggatatcgaagggcttggtgaaaagatcatagacaga
ctggtggattcaggtctggttaaggacatagcggacatcttctatctcacaccctttgat
cttgcccagcttggccccggtattggccagagaacgatcgcgaagattctgcaggagata
gaagaagcaaagaaaagacccctgcacaagctcataaccggtcttggaataccgatggtg
gggcaaaaaacggcgaagattcttgcagaacacttcaaatctcttgaagcaatagccgag
gcttcctacgaaacgttgaaggacattccaggaatcggaccggaaatagcaaggagcatt
gtagagtacttcagaaatccgaagacaagggagattatagaaaaactgaaaaaggcagga
gtgaaacttgaagagaaaaccgtaaagtacgatgtgctgaaaggactgacgtttgccgtg
accggcacgctgaaaaacttcacaagagaggagatcatcgaatttctggagagactggga
gccagagtggtcaactcggtgagtaagaacaccgactatctcatcgttggggaaaatcca
ggttccaagtacgaaaaggcaaaggcgttgaaggtgaagacgatgagcgaggaagagttt
ctgagatttgtggaaaatagagcaaaactgaaaggttacaacttcgatgagatcatgagg
ggatggaaagaatggagctga
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