Tepidibacter hydrothermalis: P4S50_02705
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Entry
P4S50_02705 CDS
T09528
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
thyr
Tepidibacter hydrothermalis
Pathway
thyr03030
DNA replication
thyr03410
Base excision repair
thyr03420
Nucleotide excision repair
thyr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
thyr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
P4S50_02705 (ligA)
03410 Base excision repair
P4S50_02705 (ligA)
03420 Nucleotide excision repair
P4S50_02705 (ligA)
03430 Mismatch repair
P4S50_02705 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thyr03032
]
P4S50_02705 (ligA)
03400 DNA repair and recombination proteins [BR:
thyr03400
]
P4S50_02705 (ligA)
Enzymes [BR:
thyr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
P4S50_02705 (ligA)
DNA replication proteins [BR:
thyr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
P4S50_02705 (ligA)
DNA repair and recombination proteins [BR:
thyr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
P4S50_02705 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
P4S50_02705 (ligA)
MMR (mismatch excision repair)
DNA ligase
P4S50_02705 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
P4S50_02705 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
RNA_ligase
Nlig-Ia
RNA_lig_T4_1
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
WFD11003
LinkDB
All DBs
Position
629658..631685
Genome browser
AA seq
675 aa
AA seq
DB search
MDIKKRVQEITEIINYHNHKYYVEDDPEIDDYDYDMLMNELIDIEKKYPEYKREDSPTQR
VGGAVLDKFEQVVHKTPMLSLSNAFSGNDLRDFDNRIKGVVNSDVEYVVEFKIDGLSAVI
TYENGVLKIGATRGDGSVGENVTKNLKTVKSIPMKISGNLNLQVRGEVFIPKDKFEKLNK
YQEENGLNLFANPRNAAAGSLRQLDSKIAAKRHLDMFVFNLEGIDEDKFKTHSESLEFLK
ELGFKVSSNYKVCKNIEEVIEFINYWTEHRSELKFDIDGMVIKVNDLKQREELGNTTKSP
RWAIAYKFPAEKKKTKLLDIIIQVGRTGNLTPTALLEPVQVAGSIVSRATLHNEDYIKQK
DIKIKDTVIIQKAGDVIPEVVEVVKEERDGTQVEFKMPDECPECGFETSRLEGEAAVKCM
NISCPAQIRRGIIHFVSRDAMNIDGLGERIVTLLLKENLIKDIADIYYLKKEDLVSLERM
GEKSSQNLIEAIQKSKENDLSRLVFGLGIKYIGSKGAKILAGNFDDIYKIIEAEKEDLIQ
LEEFGEIMADSVVDFFNNDKNLELIEKFKSVNVNLKSLKSESNEVKIFDGMKIVLTGTLD
KYKRNDVKEIIEKFGGKVTGSVSKSTNIVFAGREAGSKLDKANSLGIKVIDENTFDEIIK
LSSKEEVQKHLDMSN
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggatattaaaaaaagagtacaagaaattactgaaattataaattatcataatcataag
tactatgttgaggatgatcctgagattgatgattatgattatgatatgttgatgaatgag
cttatagatatagagaaaaaatatccagaatataaaagagaggattctccaactcaaaga
gttggtggggcagtacttgataaatttgaacaagtagtacataagactcctatgctaagt
ctttccaatgcgttttcgggtaatgatttgagagattttgacaatagaataaaaggtgta
gtaaatagtgatgttgaatatgtagtagaatttaagatagatggattatctgcagttata
acttatgaaaatggagttttgaaaattggtgcaactcgtggggatggttctgttggagaa
aatgtaactaagaacttaaagactgtaaagagtatacctatgaaaattagtgggaatctg
aatttgcaggtaagaggagaagtatttataccaaaagataaattcgaaaagcttaataaa
tatcaagaagaaaatggattgaatttatttgcaaatcctagaaatgcagctgcaggttca
ttaagacaacttgattctaagattgctgcaaagagacatttagatatgtttgtattcaat
cttgaaggaatagatgaagataaatttaaaactcacagtgaaagtttagaatttttgaaa
gaattaggatttaaagttagctctaattataaagtttgcaagaatatagaagaagttata
gaatttataaattattggacagagcatagatcagagctgaagtttgatatagatggtatg
gttataaaggttaatgatttaaagcaaagagaagaattaggtaatacaactaaaagtcct
cgttgggcaatagcttataaattccctgctgaaaagaaaaagactaaattactagatata
ataattcaggttggaagaacgggaaatcttacaccaacagccttacttgagccagttcaa
gttgcaggatctatagtatcaagagcaacactgcataatgaagattatataaaacaaaag
gatattaaaatcaaagatacggttataatacaaaaagctggagatgtgataccagaggtt
gtagaagttgttaaagaagagagagatggtacacaagtagaatttaaaatgcctgatgaa
tgcccggagtgtggatttgaaactagtagattagagggagaagcagctgttaagtgtatg
aacatatcttgtcctgctcaaataagaagagggatcatacattttgtatcaagagatgct
atgaatatagatggattaggagaacgaatagtaactcttttattaaaagaaaatttaata
aaagatatagcagatatttattacttgaaaaaagaagatttagtctctcttgagagaatg
ggtgaaaagtcttctcaaaatttaatagaggctatacaaaaatcaaaagaaaatgatttg
tctagattagtattcggtttaggaataaagtatataggaagtaagggtgctaaaatactt
gcgggtaattttgacgatatatacaaaataatagaagctgagaaagaggatttaattcaa
cttgaagaatttggagagattatggctgatagtgtagttgatttcttcaataacgataag
aatttagaacttatagagaaatttaagtctgtaaatgtaaacttgaaatcattaaaaagt
gaaagtaatgaggttaaaatatttgatggaatgaagattgttttaacaggaacacttgat
aaatataagagaaatgatgttaaagaaataatagaaaaattcggtggtaaagtaacggga
agtgtaagtaaatcaacgaatatagtatttgcaggtagagaagctggatctaagcttgat
aaggctaattctcttggcataaaagttatagatgaaaatacatttgatgaaataataaag
ctatcttctaaggaagaagttcaaaaacatttagatatgagtaactaa
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