Thiomicrorhabdus immobilis: THMIRHAM_11780
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Entry
THMIRHAM_11780 CDS
T08420
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tib
Thiomicrorhabdus immobilis
Pathway
tib03030
DNA replication
tib03410
Base excision repair
tib03420
Nucleotide excision repair
tib03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
THMIRHAM_11780 (ligA)
03410 Base excision repair
THMIRHAM_11780 (ligA)
03420 Nucleotide excision repair
THMIRHAM_11780 (ligA)
03430 Mismatch repair
THMIRHAM_11780 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tib03032
]
THMIRHAM_11780 (ligA)
03400 DNA repair and recombination proteins [BR:
tib03400
]
THMIRHAM_11780 (ligA)
Enzymes [BR:
tib01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
THMIRHAM_11780 (ligA)
DNA replication proteins [BR:
tib03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
THMIRHAM_11780 (ligA)
DNA repair and recombination proteins [BR:
tib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
THMIRHAM_11780 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
THMIRHAM_11780 (ligA)
MMR (mismatch excision repair)
DNA ligase
THMIRHAM_11780 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
THMIRHAM_11780 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
5_3_exonuc
TF_Zn_Ribbon
PADR1_Zn_ribbon
Motif
Other DBs
NCBI-ProteinID:
BCN93393
LinkDB
All DBs
Position
complement(1328063..1330090)
Genome browser
AA seq
675 aa
AA seq
DB search
MSTITQVHLNELKQRIAELNYAYYVLDNPLISDAQYDELYRQLVEIEKHHPEWITPDSPT
QRVGDKPLSHFESVTHAVPMFSLDNAFSQEDLMDFQRRVKERLNAQGEIEFSAEPKMDGL
AINIRYEKGQLIQATTRGDGLVGEDVTHNIRTIHSVPLHLLGDGWPEILEVRGEVFMSKK
VFNQLNSEYITRGEKPFANPRNAAAGTLRQLDPKIAAQRKLSLYLYGWGQISDDWQLPDT
YDAAIACFKTWGLPTNPDAQVVKGAQGMSEYYEMLIEKRASMPYEIDGIVYKVNALNTHQ
RLGFTAKAPRWAIARKFPAEEVWTRLLDIEIQVGRTGALTPVARLEPVAVGGVVVSNATL
HNQDEIERKDVRIGDMVIVRRAGDVIPEVVGPVLAQRPADVRQFVMPHFCPECGSEVVKE
TDKAVYRCTGGLYCPAQRKRALQHFVSRKAMDIVGLGDKLIEQLGALEIVKHPDDLYRLE
VETLAAMERMASKSAQKVIDAIESSKQTTLARFVFALGIPEVGEVTAKNLAHHFLSLDAI
QQADKEQLLEVADVGEIVAEHIVTFFQQPHNQEVIKGLLEAGIHWPTPEQKAVVEDSVFA
NKVVVLTGSLQQLSRTDAKQKLEAMGAKVTGSVSAKTDYVIAGEKAGSKLTKAEQLGISV
LTEAEWIEMMGEMNG
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgtctacgattacccaagtccatttaaacgaattaaaacaacgtattgccgaactcaat
tacgcctattatgtcttggataatccgttaataagtgatgctcaatatgatgagctgtac
cggcagcttgtagagattgaaaaacatcatcctgaatggatcacaccagattcacctaca
cagcgtgttggtgataagcctttatcgcattttgagtcggtcacccatgccgtaccgatg
ttctctctagataacgcgttttctcaagaagatttaatggattttcaacgtcgtgttaaa
gagcgtttgaacgcacagggcgagattgagttttctgccgaacctaaaatggatggcttg
gcaatcaatattcgttacgaaaaaggccagcttattcaagcaaccacacgtggggatggt
ttggttggtgaggatgtgacccataacattcgtaccatacattcggtacctttacatttg
cttggtgatggttggccagagattctagaagtgcgaggtgaagtctttatgtctaaaaaa
gtctttaaccaactcaattcagagtatatcactcgaggagaaaaaccttttgccaatcct
agaaatgcagctgcgggcactttacgccagctagacccgaaaattgcagcgcaaaggaag
ctcagcttatatctttatggttggggacaaatcagtgatgattggcaacttccggatacc
tatgatgccgctatcgcttgtttcaaaacctggggcttaccaacaaacccggatgctcaa
gtggtcaagggcgctcaaggtatgtccgaatactatgaaatgttgattgaaaaaagagcc
tcgatgccttacgagattgatggcattgtctataaggtaaatgctttaaacacccaccaa
agattagggtttaccgccaaagcaccacgctgggcaatcgccaggaagttcccagcagaa
gaggtttggacccgattgttggatattgaaatccaggtggggagaaccggggcgttaacc
cctgttgccaggcttgaaccggtagctgttggaggggtggttgtttctaatgccacttta
cataaccaggatgaaatcgagcgtaaggacgttcgtattggcgatatggttattgttaga
cgagcgggggatgttatacctgaagtggttggtccggttttggcacagcgtcctgccgat
gttaggcaatttgtcatgccgcatttttgccctgaatgtggttctgaggtggttaaagag
actgataaggcggtataccgttgcactggagggctttattgtcccgcacaacgtaaacgc
gctttgcaacattttgtatcacgtaaagcgatggatattgttggattaggtgataaactt
attgagcagttgggcgcattggaaattgtgaagcaccctgatgacctatatcgcttggag
gttgaaaccttggcggcaatggaacgtatggcgagcaagtcagcccagaaggtgattgat
gcgattgaatcatcgaaacaaaccactttagcacggtttgtgtttgctttgggtattcct
gaagtgggtgaagtgaccgctaaaaatttagcccaccactttttaagcttggatgcgatt
cagcaagccgataaagaacaattgttagaagttgctgatgtgggtgagattgttgccgag
catattgtgaccttctttcagcaacctcataatcaagaagtgattaaaggtttgcttgag
gcgggtattcattggccgactccagagcaaaaggcggtggttgaagattctgtttttgcc
aataaagtggtggtgttgacaggctctttacagcagttatcacgcaccgatgcaaaacaa
aaattagaagctatgggtgccaaagtcaccggtagtgtttccgctaaaaccgactacgtg
atagccggtgaaaaagcgggttccaaattaaccaaagcagaacaacttggcatttctgtt
ttaactgaggcagaatggatagaaatgatgggagagatgaatggttag
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