Thalassospira indica: DY252_06415
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Entry
DY252_06415 CDS
T05581
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tii
Thalassospira indica
Pathway
tii03030
DNA replication
tii03410
Base excision repair
tii03420
Nucleotide excision repair
tii03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DY252_06415 (ligA)
03410 Base excision repair
DY252_06415 (ligA)
03420 Nucleotide excision repair
DY252_06415 (ligA)
03430 Mismatch repair
DY252_06415 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tii03032
]
DY252_06415 (ligA)
03400 DNA repair and recombination proteins [BR:
tii03400
]
DY252_06415 (ligA)
Enzymes [BR:
tii01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DY252_06415 (ligA)
DNA replication proteins [BR:
tii03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DY252_06415 (ligA)
DNA repair and recombination proteins [BR:
tii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DY252_06415 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DY252_06415 (ligA)
MMR (mismatch excision repair)
DNA ligase
DY252_06415 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DY252_06415 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
RNA_ligase
PSII_Pbs27
Motif
Other DBs
NCBI-ProteinID:
AXO13898
UniProt:
A0ABM6XWP5
LinkDB
All DBs
Position
complement(1345907..1348015)
Genome browser
AA seq
702 aa
AA seq
DB search
MSAEHASNMSELPELPSSSTEARKQHAEISERIRSYNEAYHVNDDPLVSDATYDALFNRL
IELESHYPTLKKNSPTQEVGAAPAEGFAKVKHARPMLSLGNAFSREDIVDFLARIRRFLN
LTAHSPVEVVGEPKIDGLSLSLRYENRQLVTAATRGDGSEGEDVTANVAHIDDIPKTLPD
DAPDVVEIRGEVYMARSAFQKLNATQAETGGKTFANPRNAAAGSLRQLDPSISAKRPLRF
FAYSFGELSESLAQTQWNFLQKVEGWGFVTNPLTRLLHNADDIMAFYDELATQRPDLDYD
IDGIVYKVNDFELQLRLGFVSRSPRWAIAHKFPAEKARTRIKAIDIQVGRTGALTPVARL
EPVTVGGVVVSNATLHNRDEIDRLGVWVGDLVVVQRAGDVIPQVVEVILDEDGNHPNDAT
PYEFPTECPKCGSHAMREEGEAVTRCTGGLICPAQAVERLKHFVSRTAFDIDGLGAKNVE
AFFELGWLKSPGDIFRLESDHGDAIRKLEGWGEKSATKLFDGINERRTIGLDKFIYALGI
RQIGQATAKLLARHYGSLAEWRSAMVAANEADSEALRELINIDQIGPGVAKDLIEFMAED
HNREVLDDLQGLLTITDVEAPQVSDNPVNGKTVVFTGKLELFSRNEAKVKAESLGAKVAG
SVSAKTDYLVAGPGAGSKLKKAEELGVTVLDEQGWLDLIATE
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccgaacacgcgtcaaacatgtccgaacttcccgaattgccgtcttcgagcacg
gaggcgcgcaaacagcatgccgaaatttctgaacgtatccggtcttataacgaggcctat
cacgtcaatgacgacccgctggtttcggatgcgacatatgatgcgctgttcaatcgcctg
atcgaacttgaatcccactatccgacgcttaagaaaaacagcccgacacaggaagtcggt
gccgccccggccgaaggctttgccaaggtcaagcatgcccgcccgatgctgtcacttggg
aatgcgttttcgcgcgaagacattgtcgattttcttgcccgtattcgtcgcttcctgaac
ctgacggcgcacagcccggttgaggtggttggcgaacccaagatcgatggtctttcgctg
tcgctgcgctacgagaaccgccaactggtcaccgccgccacccgcggtgacgggtcagaa
ggcgaagacgttaccgccaatgtcgcccatattgacgacatccccaagacacttccagat
gatgcgcccgatgtggtcgaaatccggggcgaggtttatatggcacgctctgcgtttcag
aaactgaacgcgacccaggccgaaaccggcggcaaaacctttgccaatccgcgcaacgca
gcggcaggatcgcttcgccagcttgatccatcgatcagcgccaaacgcccgcttcgtttc
tttgcctatagctttggcgaactgtccgaaagcctggctcagacgcagtggaatttcctg
cagaaggttgaagggtggggctttgtcaccaatccgctgacccggttgcttcataacgcc
gatgacatcatggcgttctatgacgaactggcaacccagcggccggaccttgattacgac
attgatggcatcgtctataaggtcaatgactttgaactgcagctgcgcctcggcttcgtc
agccggtcaccgcgctgggcgattgcgcacaaattcccggccgagaaggctcgcactcgg
atcaaggccatcgacattcaagttggtcgaacaggtgccctgaccccggtcgctcggctg
gagccggttacggttggcggtgtcgtggtatccaacgccacccttcataaccgagatgag
attgaccgcttgggcgtttgggttggcgatcttgtggttgtgcaacgtgccggtgacgtt
attccccaagtcgttgaggtcattctggacgaggatggcaatcatccgaatgatgcaaca
ccttacgaatttcccaccgagtgcccaaaatgcggcagccacgccatgcgcgaagaaggc
gaagccgtaacccggtgtaccggcggcctaatctgtccggcacaggcggttgagcgcctg
aaacatttcgtatcgcgcacggcctttgatatcgatggcctgggcgcaaagaatgtcgag
gcgttctttgaactgggttggctgaagtcgcctggcgatattttccgccttgaaagcgat
cacggcgatgccatccgcaagcttgaaggttggggcgagaaatccgcaaccaagctgttt
gacggcatcaatgaacggcgcaccatcgggctcgacaagtttatctatgcacttggcatt
cgccagatcggtcaggcaaccgcaaagcttctggcacgccattatggatcgcttgccgaa
tggcgtagcgccatggttgccgccaatgaagccgacagcgaagcccttcgcgaactgatc
aacattgatcagatcggcccaggtgtcgccaaggacctgatcgaattcatggccgaagat
cacaaccgagaggttctggatgatctgcaaggacttttgaccataaccgatgtcgaagcc
ccgcaggtcagcgacaatccggtcaatggcaaaaccgttgtctttactggcaagttggag
ctgttttcacgcaacgaggccaaggtcaaagccgaaagtcttggtgcaaaggtcgccgga
tccgtatcggcaaaaaccgattatctggttgcaggaccgggtgcgggctccaaattaaag
aaagcagaagaattaggtgttacagtgcttgatgaacagggatggcttgatctgattgcc
acggaataa
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