Thiomicrolovo immobilis: WCX72_04300
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Entry
WCX72_04300 CDS
T11235
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
timm Thiomicrolovo immobilis
Pathway
timm03030
DNA replication
timm03410
Base excision repair
timm03420
Nucleotide excision repair
timm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
timm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
WCX72_04300 (ligA)
03410 Base excision repair
WCX72_04300 (ligA)
03420 Nucleotide excision repair
WCX72_04300 (ligA)
03430 Mismatch repair
WCX72_04300 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
timm03032
]
WCX72_04300 (ligA)
03400 DNA repair and recombination proteins [BR:
timm03400
]
WCX72_04300 (ligA)
Enzymes [BR:
timm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
WCX72_04300 (ligA)
DNA replication proteins [BR:
timm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
WCX72_04300 (ligA)
DNA repair and recombination proteins [BR:
timm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
WCX72_04300 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
WCX72_04300 (ligA)
MMR (mismatch excision repair)
DNA ligase
WCX72_04300 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
WCX72_04300 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XAU06217
LinkDB
All DBs
Position
833772..835724
Genome browser
AA seq
650 aa
AA seq
DB search
MTAETYRESVALLNRYAYHYYVLDNPIASDEEYDTLYHDVLAYEEAHPEAVLPDSPTQRV
GGVPLEGFEKAAHRSRMWSLEDIFDAEGLQKWLERVAKLADNVTFYCEPKFDGASLNLIY
EGGRLVQAITRGDGTIGEEVTQNVKTIRSVPLAIEYDGRIEIRGEVVIFKEEFDAINRER
EAQGEALFANPRNAAAGSLRQLDPKITAARNLVFLPYGIGENTLDIPLLSKRMEWIYALG
FRKPPLHRVCEGYDDIEAIYEEMKVTRDDFAMMLDGMVIKVDQVEAQEDMGYTVKNPRWS
VAYKFPAIEKMTRVRDVILQVGRTGVVTPVAIVEPVDIEGVVVERATLHNFDEIGRKDIH
IGDHVIILRSGDVIPKIIKVIPERRDGSERAVERPTRCPVCGSELLDEGALIKCQNLSCE
ARVVNAIIYFASKQCLNIDGLGDKIVEALYRAGLVKGVIDLYHLSLGALLELEGFKEKKS
KNLLDAIEKSRGTVCWRFVNGLGIEHIGEVASKQLCDTFGLDFPDATEEALFAIDGFGGE
MAASVLEFVRVNREQIEALRGVVQPAAPEQKAEAAENPFKGKTVVLTGTMSRPRPEIKTD
LEALGAKVAGSVSKKTDYVIYGEDAGSKYDKAVSLGVATLTEDAMKQMLQ
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgacggctgaaacctaccgcgaaagcgtggcgctgctgaaccgctacgcctaccactat
tatgtcctcgacaaccccattgccagcgacgaggagtacgacacgctttaccatgacgtc
ctggcgtacgaggaggctcatccggaggcagtgcttcccgattcgccgacgcagcgggtc
ggcggggtgccgcttgaagggtttgaaaaggccgcgcatcgcagccgcatgtggagtctg
gaggatatattcgacgccgaggggctgcagaaatggctggagcgcgttgcaaagcttgcc
gacaacgtcaccttctactgcgagccgaagtttgacggggcgagcctcaacctgatctac
gaaggcggccgtctcgtgcaggcgatcacccgcggcgacggcacgatcggcgaagaggtg
acgcagaacgtcaaaacgatccgcagcgttcccctcgccatcgagtatgacgggcgtatc
gagatccgcggcgaagtcgtcatcttcaaagaggagttcgacgcgatcaaccgcgagcgc
gaagcgcagggcgaagcgctcttcgccaacccgcgcaacgccgccgcgggaagtctgcgc
cagctcgacccgaagatcaccgcggcacgcaatctcgtcttcctgccctacggcatcggt
gaaaatacgctcgacatcccgctgctgagcaagcggatggagtggatctacgccctgggc
ttccgcaaaccgccgctgcaccgcgtctgcgagggctatgacgacatcgaggccatttac
gaggagatgaaagttacccgggacgatttcgcgatgatgcttgacggcatggtcatcaag
gtcgaccaggtcgaggcccaggaggatatgggctatacggtcaagaacccccgctggtcg
gtggcctacaagttcccggcgatcgagaagatgacccgggtccgcgacgtgatcttgcag
gtggggcgcaccggtgtcgtcacccccgtggcgatcgtcgagccggtcgacatcgagggg
gttgtcgtcgaacgcgcgaccctgcacaactttgacgagatcgggcgcaaggatatccac
atcggagaccacgtcatcatcctgcgcagcggcgacgtcatcccgaagatcatcaaggtc
attcccgaacggcgtgacggctcggaaagggcggttgaacgtccgacgcgctgcccggtc
tgcggcagcgaactcctcgacgagggggcgctgatcaagtgccagaacctctcctgcgaa
gcgcgggtcgtgaacgccatcatctatttcgcctccaagcagtgcctcaacatcgacggc
ctcggcgacaagatcgtcgaggccctctaccgggcggggctggtcaaaggggttattgac
ctttaccatctctccctgggtgcactactggagctcgaagggttcaaggagaagaagagc
aagaacctgctcgacgccattgaaaagagccggggcacggtgtgctggcgctttgtcaac
gggcttgggatagagcacatcggcgaggtcgcttcgaaacagctctgcgacaccttcggc
ctggatttccccgacgcgacggaggaggcgctgttcgccatcgacggtttcggcggggag
atggcggcgtcggtgctcgaatttgtccgggtcaaccgggaacagatcgaagcgctgcgc
ggcgtcgtccagccggcggccccggaacagaaggctgaggcggcggagaaccctttcaag
gggaagacggtcgtgctcaccggcacgatgagccgaccccgtccggagatcaaaaccgac
ctggaggccctgggggccaaggtcgcggggagcgtgtcgaaaaagaccgattacgttatt
tacggcgaggacgccggcagcaagtacgataaggcggtgtcgctgggggtggcgaccctt
acggaagatgcgatgaaacagatgctacaatag
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