Thermoanaerobacter italicus: Thit_0590
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Entry
Thit_0590 CDS
T01178
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tit
Thermoanaerobacter italicus
Pathway
tit03030
DNA replication
tit03410
Base excision repair
tit03420
Nucleotide excision repair
tit03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Thit_0590
03410 Base excision repair
Thit_0590
03420 Nucleotide excision repair
Thit_0590
03430 Mismatch repair
Thit_0590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tit03032
]
Thit_0590
03400 DNA repair and recombination proteins [BR:
tit03400
]
Thit_0590
Enzymes [BR:
tit01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Thit_0590
DNA replication proteins [BR:
tit03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Thit_0590
DNA repair and recombination proteins [BR:
tit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Thit_0590
NER (nucleotide excision repair)
GGR (global genome repair) factors
Thit_0590
MMR (mismatch excision repair)
DNA ligase
Thit_0590
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Thit_0590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
BRCT_2
PTCB-BRCT
RNA_ligase
HHH_3
COMM_HN
HHH_8
RNA_pol_A_CTD
CoA_binding_2
RUBY_RBDX
Cdd1
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
ADD01891
UniProt:
D3T7F9
LinkDB
All DBs
Position
639998..641986
Genome browser
AA seq
662 aa
AA seq
DB search
MDPKERINELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPELKTPDSPSQR
VGGEPLKEFEPFTHIVPMLSLANAFSEGELKDFDRRVREAVGDVEYVVELKIDGLSVELI
YENGIFTVGSTRGDGIIGENVTPNLKTIKSIPLRLKDNVSLVVRGEVFMPRASFERLNTE
REKLGESLFANPRNAAAGSLRQLDPKVTAKRDLDIFIFNLQRVEGRKFKTHVETLQFLKE
QGFKVIPIHKKCSNIDEVIREIEEIRNLKDKLPYDIDGAVVKVNDLEKREILGQTAKEPR
WAIAFKYPAERKKTKVLDIIVQVGRTGALTPTAILEPVPISGSVVSRATLHNEDYIKEKD
IRIGDTVIIQKAGEIIPEVVEVVKEERTGHEREFIMPNKCPVCGALAVRLPGEAVRRCTS
VNCPAQLLRGIIHFASKDAMDIEGLGPAIINQLLSNGLIHNIADLYYLKYEDLIQLERMG
DKSVKNLLNAIEESKTRDLDRLLFGLGINLIGSKAAQVIAEHFKTMDDIMKAKFEDFTKL
PDVGPKMARSIVSFFAEKQNVETIEKLKKAGVNMKKLSKEKVSSIFEGKTFVLTGALENY
TREEATRIIEERGGKVTNSVSKKTDYVLVGKDPGSKLKKAQELGIEIIDEKQFEEMLKGE
NI
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atggatccaaaagaaaggataaatgaattgagagaaaaaataaattatcacaattacaga
tattacgttttggaccaaccagagatttcagactatgagtacgacatgctgatgagagaa
cttatagaattagaagaaaaatatccagaacttaaaactccagactctccatcccaaagg
gtaggtggggagcctttaaaagaatttgagccttttacccatatagttccaatgctgagt
ttggctaatgctttttctgaaggagagcttaaagattttgacagaagagtaagagaggca
gtgggagatgtagagtacgtagtagaattaaaaattgacggcttatctgtggaactaatt
tatgaaaatggcatatttactgtgggttctacaaggggagacgggattataggagaaaat
gttacaccaaatttaaaaactataaagtcaattcctttaaggcttaaggacaatgtaagc
cttgttgtaaggggagaggtttttatgcctcgcgcttcttttgaaagattaaacacagaa
agagaaaaattaggggaaagcctttttgcaaatcctagaaatgccgcagcaggttcttta
aggcaattagaccctaaagtgactgcgaaaagggatttggacatttttatttttaacctt
caaagggttgagggtagaaaatttaaaactcacgtcgagacattacaatttttaaaagaa
caagggtttaaagtaatacccattcacaaaaaatgtagcaatatagatgaagtaataaga
gaaatagaagaaataagaaatttaaaagataaattgccttatgacattgatggggcagta
gtaaaagtaaatgaccttgaaaagagggagattttaggtcagactgcaaaggaaccaaga
tgggctattgcttttaaatatcctgcagagaggaaaaaaacaaaagttttggacataata
gttcaagtaggaagaaccggagctttgactcctacagctatattggagccagtgcccatc
tcaggttctgttgtaagccgagcaacccttcacaatgaggactacataaaagagaaagac
ataaggataggagatacagtaataattcaaaaagcgggagaaatcattcctgaagtagta
gaagtggtaaaagaagagagaactggacatgaaagagagtttataatgccgaataaatgc
cccgtttgtggtgctttagctgtaaggcttcccggagaagccgtaaggcgttgtaccagc
gttaactgtcctgctcagcttttaagaggtattatccattttgcttctaaagatgcaatg
gacatagaagggttgggaccagctataataaatcagcttttgtcaaatgggctaattcac
aacatagcagatttgtattatcttaaatacgaagatttaatacaattagaaagaatggga
gacaaatctgttaaaaatttattaaatgctattgaagaaagcaaaacaagggatttagat
agattgctctttggcttgggtataaacttaataggcagtaaagctgcccaagtgatcgcg
gagcattttaagacaatggacgatattatgaaggcaaaatttgaagattttacaaagttg
cctgacgtaggacctaagatggcaagaagcatagtttccttttttgcagaaaaacaaaat
gtagagacaattgaaaaacttaaaaaggctggagtaaacatgaaaaaactttcaaaagaa
aaagtaagcagcatatttgaagggaaaactttcgttttgacaggggcgttggaaaattac
acgagagaagaagctaccagaataattgaagaaagaggtggaaaagttacaaattcagta
agtaaaaaaacggactatgtattagtagggaaggatcctggttctaaacttaaaaaagct
caagaattaggaatagagataattgatgaaaaacaatttgaagaaatgctaaaaggtgaa
aatatttaa
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