Tenacibaculum jejuense: TJEJU_1821
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Entry
TJEJU_1821 CDS
T05041
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tje
Tenacibaculum jejuense
Pathway
tje03030
DNA replication
tje03410
Base excision repair
tje03420
Nucleotide excision repair
tje03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tje00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TJEJU_1821 (ligA)
03410 Base excision repair
TJEJU_1821 (ligA)
03420 Nucleotide excision repair
TJEJU_1821 (ligA)
03430 Mismatch repair
TJEJU_1821 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tje03032
]
TJEJU_1821 (ligA)
03400 DNA repair and recombination proteins [BR:
tje03400
]
TJEJU_1821 (ligA)
Enzymes [BR:
tje01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
TJEJU_1821 (ligA)
DNA replication proteins [BR:
tje03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TJEJU_1821 (ligA)
DNA repair and recombination proteins [BR:
tje03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
TJEJU_1821 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TJEJU_1821 (ligA)
MMR (mismatch excision repair)
DNA ligase
TJEJU_1821 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TJEJU_1821 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Auto_anti-p27
HHH
F55H2_N
HNOB
Motif
Other DBs
NCBI-ProteinID:
SNR15530
UniProt:
A0A238UAU1
LinkDB
All DBs
Position
TJEJU:1988598..1990595
Genome browser
AA seq
665 aa
AA seq
DB search
MTIKDKIESLRKELNTHNYNYYVLDNATISDYEFDIKLKELEKLEEENPEFFDPNSPTKR
IGGEITKNFNTITHKNRMYSLDNSYSKEDLLDWEKRIQKNLGTTDIEYTCELKYDGASIN
LTYENGKFFSAVTRGDGFQGDEVTANIRTIKSIPLHLSEDFVSNFEMRGEIILPLEGFHK
MNEDRVANGEDPYRNPRNTASGSLKLQDSAEVAKRPLDCLLYQVVTNERKYKTHFQSLNA
ARNCGFKIPDTIALAKSIDEVLAFVNHWDVERHNLPYETDGVVVKVNSLQQQEELGYTSK
SPRWAIAYKFKAEQVTTILNEITYQVGRTGAITPVANLEPVHLAGTIVKRASLHNADQIE
KLDVRIGDTVFVEKGGEIIPKIMGVDVSKRAEDSLPTKYAEHCPVCNTPLVRTEGDAKHY
CLNEFGCAPQITGKIQHYISRKAMDIDGLGSETVDLLHKEGLIKNYADIYELTVEQIIPL
ERMAEKSAMNMVEGIKKSKEIPFEKVLFALGIRFVGETVAKKLAKHFKSIDNLSSASFED
LIAVDEIGDRIAESVIAFLSDENNIEIISRLKTHGVQLEVSQEALANQTNKLESKVFVVS
GVFHQMSRNELKKAIEDNGGKVSSSISKKTNYIVAGDNMGPSKLAKAEALNIPIISEEDF
IEMIN
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgacaattaaagataaaatagaatcgcttagaaaagaattaaatacgcataattataat
tattatgttttagataacgctacaatttctgattatgagtttgatattaaacttaaagaa
ttagaaaagttagaagaagaaaatcctgagtttttcgatccgaattcaccaacaaaaaga
ataggaggtgaaatcactaagaacttcaatacaattacccataaaaatagaatgtattct
ttagataactcatattctaaagaagatttattagactgggaaaaacgtattcagaaaaac
ttaggaactacagatattgaatatacatgtgagctgaagtacgatggagcatctatcaac
ttaacttatgaaaatggaaaattctttagcgcagttactagaggagacggctttcaaggt
gatgaagtaacagcaaatattcgtaccataaaatctattccattacacctttccgaagat
tttgtgtcaaattttgaaatgagaggagaaatcatacttcctttagaaggatttcataaa
atgaatgaagatcgagttgcaaacggagaagatccttatagaaacccgagaaatacagct
agtggaagtttaaagttacaagatagtgcagaagtagcaaaaagacctttagattgtctt
ttatatcaagttgtaactaatgaaagaaaatataaaactcatttccagagtttaaatgca
gctcgtaactgtggatttaaaataccagatactatagcattggcaaaatctatagacgaa
gttctagcatttgtgaatcattgggatgttgaaagacataatttaccttatgaaaccgat
ggtgttgtagtaaaagtaaattctttacaacagcaagaagaattaggttatacatcaaaa
tcaccaagatgggcaattgcttacaaatttaaagcagagcaggttactacaattttaaat
gaaattacttaccaagtaggaagaactggagccataactcccgtagcaaatttagagcca
gttcatttagcaggaacaattgtaaaaagagcttcacttcataatgcagatcagattgaa
aaattagatgttcgtattggtgatacagtttttgttgaaaaaggaggagagattattccc
aaaataatgggagtagatgtatcaaaaagagcagaagattctttaccaactaaatatgca
gaacattgtccggtttgtaatactccattagtaagaacagagggagatgctaaacattat
tgtctaaatgagtttggatgtgcgccacaaattactggtaaaatccaacattacattagt
agaaaagcaatggatattgatggtttaggatctgaaactgtcgatttactacataaagaa
ggattaattaagaattatgcagacatttacgagctaactgttgagcaaattattccttta
gagaggatggcagagaaatctgctatgaatatggtagaaggaattaaaaaatcaaaagaa
atacctttcgaaaaagtattgtttgctttaggaattagatttgtaggtgaaacagtagca
aaaaagttagcgaaacattttaaatccatagataatttatcatcagcaagttttgaagat
ttaatagctgtagatgaaataggagatagaatagcagaaagtgttattgcttttttatct
gatgaaaataatatcgaaattataagtagattaaaaactcatggtgtgcaattagaagtt
tctcaagaagctttagcaaatcaaactaataaattagaaagtaaagtttttgtagtttct
ggagtttttcatcaaatgagtagaaatgaactaaaaaaagcaattgaagataatgggggg
aaagtaagtagttctatttctaaaaaaacaaactatattgtcgctggagataatatggga
cctagtaagttagctaaagctgaagctttaaatattcctattatttctgaggaagatttt
atcgaaatgattaactaa
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