Thermincola carboxydiphila: TherJR_0850
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Entry
TherJR_0850 CDS
T01226
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tjr
Thermincola carboxydiphila
Pathway
tjr03030
DNA replication
tjr03410
Base excision repair
tjr03420
Nucleotide excision repair
tjr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tjr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TherJR_0850
03410 Base excision repair
TherJR_0850
03420 Nucleotide excision repair
TherJR_0850
03430 Mismatch repair
TherJR_0850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tjr03032
]
TherJR_0850
03400 DNA repair and recombination proteins [BR:
tjr03400
]
TherJR_0850
Enzymes [BR:
tjr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
TherJR_0850
DNA replication proteins [BR:
tjr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TherJR_0850
DNA repair and recombination proteins [BR:
tjr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
TherJR_0850
NER (nucleotide excision repair)
GGR (global genome repair) factors
TherJR_0850
MMR (mismatch excision repair)
DNA ligase
TherJR_0850
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TherJR_0850
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
HHH
PTCB-BRCT
DNA_ligase_ZBD
HHH_3
BRCT_2
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
ADG81717
UniProt:
D5XD69
LinkDB
All DBs
Position
857014..859011
Genome browser
AA seq
665 aa
AA seq
DB search
MDKAAAAKRINELRKQIEEHNYYYYVLDRPRITDAEYDRLMRELTELEQQYPDLVTPDSP
TQRVGGAPAQGFQSVRHLAPMLSLSNAFSAADLLDFDKRVRNGLAGARVEYVVELKIDGL
AVSLLYENGRFVRGATRGDGEVGEDITQNLKTIKSIPLRLRQDLELLEVRGEAYMPKKEF
ARVNEAREEAGEPLFANPRNAAAGSLRQLDPAVTAERSLDIFLYALGAVQGQAPVKTHLE
GLHLLKDLGFRINPNIVLLPNINEVIDYCQNWTEKRHDLPYEIDGMVIKVNSLAQQAALG
FTSKSPRWAIAYKFPAEQAVTKVKRIYVRVGRTGVLTPTAELEPVRVAGSTISSATLHNE
DIIREKDIRIGDTVIIHKAGDVIPEIIEVVKEKRTGQEQEFFMPAECPVCHGPVRKPAGE
VAVRCVNKDCPGRGREGLIHFVSRDAMDIEGLGPAVIDQLLTAGLVKDAADLYYLNAEDL
IKLERMGKKSVENLLNAIERSKQKDLASLIFALGIRHVGARAGKILAAHFGSMDRLKEAR
QEELTAIPEIGPKMAESIVAYFRDPAHLRLIERLRGAGVKMTQDIPERGERPLEGKTFVL
TGALEKYSRKEAQELIEKLGGKVSSSVSKKTDYVLAGADPGSKLEKARQLGITVISEDDF
ERMIK
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
ttggataaggctgctgctgcgaaaagaattaatgagctgcgcaaacaaatcgaagaacat
aactattattattacgtgctggaccggcccaggattactgatgctgaatacgacaggcta
atgcgtgagttaaccgagctggagcaacagtatcccgatttggtcacgcccgattcaccc
acgcagcgggtgggcggggctcccgcccagggatttcagagtgtccgccatctggctccc
atgctgagcttgtccaatgctttttccgctgcagatctgcttgattttgacaaaagagta
aggaacggcctggcgggggcaagggtggaatatgtagtggagttaaaaattgacgggctg
gctgtttccctgctttatgagaacgggcggtttgtccggggagccaccaggggcgacggg
gaagttggcgaagatatcacccagaatttgaaaacgattaagagcattcccctgcgttta
cgccaggatttggagcttctggaagttcgcggggaagcctacatgccgaaaaaagagttt
gccagggtaaacgaagccagggaagaagctggcgaacctctattcgctaacccgcggaac
gccgccgccggttctttgcggcaattggacccggctgtcacggcggaacgttccctggac
attttcctgtatgcccttggcgcggtacagggacaagctccggttaaaacccacctggaa
ggcttacaccttctgaaagacctgggtttcagaattaatcctaacatagttctgctgcca
aatatcaatgaggtcattgattattgccagaactggacggaaaaaaggcatgacctgcct
tatgagattgacggcatggtgattaaagtcaatagtttggcccagcaggcggcactgggg
ttcaccagcaaaagtcccaggtgggccatagcttataaatttccggctgaacaggctgta
actaaggtcaaacgaatttacgtgcgggttggccggacaggtgtgctgacccctacggcg
gaattggagccggtgcgggtggccggttccactatcagcagcgctaccctgcataatgaa
gacatcatccgggaaaaagacatccggatcggcgatactgtaatcatacacaaggccggg
gacgttattccggaaataatagaagtggtgaaagagaagcgcacaggccaggagcaggag
ttctttatgcctgcagagtgccctgtctgccacggacctgtcaggaaaccggccggtgaa
gtggctgtccggtgcgtaaacaaagattgtcccggccggggccgtgaaggattgattcat
tttgtttccagggatgccatggacattgaaggactggggccggcggtgatagaccaatta
ttgacggcaggcttggttaaggatgccgccgacctgtattacctcaatgccgaagacctg
attaaacttgaacggatgggtaagaaatcggtagaaaacttgctcaatgccatagaaagg
agtaagcaaaaagacctggcctccttaatcttcgctcttggaattcgccacgtgggagcc
agggcaggcaaaattctggcggcccattttggctccatggaccgccttaaagaggcgaga
caggaagaacttaccgctattcccgaaataggtcccaaaatggcggaaagtattgtggcc
tatttccgggaccctgcccatttgcggttgatcgagcgcctgaggggagccggagttaaa
atgacccaggatattccggaaaggggagaaagacccctggagggcaagacctttgtatta
acgggtgctctggaaaaatattccaggaaagaggcccaggaactcatagaaaaactgggc
ggcaaagtcagctccagtgtaagcaaaaagactgactacgtgctggccggcgccgacccc
ggttccaagctggaaaaagccagacagttaggtattactgtcattagcgaagatgatttt
gaaagaatgataaaatga
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