Thermoanaerobacter kivui: TKV_c05890
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Entry
TKV_c05890 CDS
T03397
Symbol
ligA
Name
(GenBank) DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tki
Thermoanaerobacter kivui
Pathway
tki03030
DNA replication
tki03410
Base excision repair
tki03420
Nucleotide excision repair
tki03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tki00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TKV_c05890 (ligA)
03410 Base excision repair
TKV_c05890 (ligA)
03420 Nucleotide excision repair
TKV_c05890 (ligA)
03430 Mismatch repair
TKV_c05890 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tki03032
]
TKV_c05890 (ligA)
03400 DNA repair and recombination proteins [BR:
tki03400
]
TKV_c05890 (ligA)
Enzymes [BR:
tki01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
TKV_c05890 (ligA)
DNA replication proteins [BR:
tki03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TKV_c05890 (ligA)
DNA repair and recombination proteins [BR:
tki03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
TKV_c05890 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TKV_c05890 (ligA)
MMR (mismatch excision repair)
DNA ligase
TKV_c05890 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TKV_c05890 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
RNA_ligase
PTCB-BRCT
HHH
BRCT_2
HHH_8
HHH_3
CoA_binding_2
Mur_ligase_M
Cdd1
Motif
Other DBs
NCBI-ProteinID:
AIS51785
UniProt:
A0A097APP4
LinkDB
All DBs
Position
582294..584282
Genome browser
AA seq
662 aa
AA seq
DB search
MEPKERIKELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPELKTPDSPSQR
VGGEPLKEFEPFTHVVPMLSLANAFSEGELRDFDRRVREAVGDVEYVVELKIDGLSVELI
YENGIFTVGSTRGDGIVGENVTQNLKTIKSIPLRLKDDVSLVVRGEVFMPRTSFEKLNEE
REKLGESLFANPRNAAAGSLRQLDPKVTAKRDLDIFIFNLQKIEDRKFKTHIETLEFLKE
QGFKVIPIHKKCSNIDEVIKEIEEIRNLRDKLPYDIDGAVVKVNELEKREILGQTAKDPR
WAIAFKYPAERKKTKVLDIIVQVGRTGALTPTAILEPVTISGSVVSRATLHNEDYIKEKD
IRIGDTVIVQKAGEIIPEVVEVVKEERTGQEREFVMPDRCPECGALAVRLPGETIRRCTG
LNCPAQLLRGIIHFASKDAMDIEGLGPAIINQLLSKGLIHNIADLYYLKYEDLIQLERMG
DKSVKNLLNAIEESKTRDLDRLLFGLGINLIGSKAAQVIAEHFKTMDNIMKAKFEDFTHL
PDIGPKMARSIVSFFAEKQNLEIIEKLKNAGVNMKKLSKEKVSNIFEGKTFVLTGALENY
TREEATRMIEERGGKVTNSVSKKTDYVLVGKDPGSKLKKAQELGIKIIDEKQFEEMLKGE
NI
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atggagccaaaagaaaggataaaggaattgagagaaaaaataaattatcacaattacaga
tattacgttttggaccaaccagagatttcagactatgagtacgacatgctgatgagagaa
cttatagaattagaagaaaaatatccagagcttaaaactccagactctccatcccaaaga
gtaggtggggagcctttaaaagaatttgagccttttacccatgtagttccaatgttaagt
ttggctaatgctttttctgagggagaacttagagactttgatagaagagtaagagaggca
gtgggagatgtagagtacgtagtagaattaaaaattgacggtttatctgtggaactaatt
tatgaaaatggcatatttactgtaggttctacaagaggagacgggatcgtaggagaaaat
gtcacacaaaatttaaagactataaagtcaattcctttaaggcttaaggatgatgtgagc
cttgttgtaagaggagaggtcttcatgccacgcacttcttttgaaaaattaaatgaggag
agagaaaaattaggggaaagcctttttgcaaatcccagaaatgctgcagcaggttcttta
aggcaattagatcctaaagtgacggcgaaaagagatttagacatttttatttttaacctt
cagaagattgaggatagaaaatttaaaactcacatagagacattagaatttttgaaagaa
caaggatttaaagtaataccaattcataaaaaatgtagcaatatagatgaagtaataaaa
gaaatagaagagataagaaacttacgagataagctgccttacgacattgatggagcagtt
gtaaaagtaaatgaacttgaaaagagagaaattttaggacagactgcaaaagaccccagg
tgggctattgcttttaaatatcctgctgagaggaaaaagacaaaagtcttggatataata
gttcaagtaggaaggactggagctcttactcctacagctatattagagcctgtaactatt
tcaggttcagttgtgagccgagctacacttcataatgaagattacataaaagagaaagac
ataaggataggagatacggtaatagttcaaaaagcgggagaaatcattcctgaagtagta
gaagtggtaaaagaagagaggactggacaagaaagagagtttgtaatgccagatagatgc
cctgaatgcggtgctttagctgtgaggcttccgggggagactataaggcgttgtacaggt
ctaaattgtcctgcacagcttctaagaggcattatccactttgcttcaaaagatgcaatg
gatatagaaggattggggccagctataataaatcagcttttgtcaaaaggtctaattcac
aacatagcagatttgtattatcttaaatacgaagatttaatacaattagaaagaatggga
gacaaatctgttaaaaatttattaaatgctattgaagaaagcaaaacaagagatttagat
agattgctctttggcttgggtataaacttaataggcagtaaagctgcccaagtgattgct
gagcattttaagacaatggacaatatcatgaaggcaaaatttgaagactttacacatttg
cctgacataggacctaagatggcaagaagcatagtttccttttttgcagaaaaacaaaat
ttagagataattgaaaaacttaaaaatgctggagtaaacatgaaaaagctttcaaaagaa
aaagtaagcaacatatttgaagggaaaacttttgttttgacaggagcgttggaaaattac
acgagagaagaagctaccagaatgattgaagaaagaggtggaaaagttacaaattcagta
agtaaaaaaacggactatgtattagtaggtaaagatcctggttctaaacttaaaaaagcc
caagaattaggaataaagataattgatgaaaaacaatttgaagaaatgctaaaaggtgaa
aatatttaa
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