Thioalkalivibrio sp. K90mix: TK90_1575
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Entry
TK90_1575 CDS
T01174
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tkm
Thioalkalivibrio sp. K90mix
Pathway
tkm03030
DNA replication
tkm03410
Base excision repair
tkm03420
Nucleotide excision repair
tkm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tkm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TK90_1575
03410 Base excision repair
TK90_1575
03420 Nucleotide excision repair
TK90_1575
03430 Mismatch repair
TK90_1575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tkm03032
]
TK90_1575
03400 DNA repair and recombination proteins [BR:
tkm03400
]
TK90_1575
Enzymes [BR:
tkm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
TK90_1575
DNA replication proteins [BR:
tkm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TK90_1575
DNA repair and recombination proteins [BR:
tkm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
TK90_1575
NER (nucleotide excision repair)
GGR (global genome repair) factors
TK90_1575
MMR (mismatch excision repair)
DNA ligase
TK90_1575
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TK90_1575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
Zn_ribbon_PF0610
Motif
Other DBs
NCBI-ProteinID:
ADC72072
UniProt:
D3SAL7
LinkDB
All DBs
Position
complement(1671770..1673863)
Genome browser
AA seq
697 aa
AA seq
DB search
MSSPSASRDGTTGAAGEVGERIEQLRRQIEHHNYRYYVLDDPEVSDAEFDALMRELEQLE
ADHPDLVTPDSPTQRVGGAPAAGFDTVRHRLPMLSLANGFESDEIRDFDRRVRERLAKQT
GDPARAEQAVAYMAEPKLDGLAISLIYENGRLVQAATRGDGETGEDVTGNVRTVRPIPLH
LGDRYTDDAPGVLEVRGEVFMRRSDFERLNQGLEADGQRGFMNPRNAAAGSLRQLDPKVT
ARRPLSFFAYSVGHVEGGTLPDTQSGTLDWLHRLGFPVCPERAVLDGVEGCLAYYERLAE
RRRELDYEIDGIVYKVDSLADQQQLGFVSRAPRWAIAHKFPAEEQTTTLRAVDFRVGRTG
ALTPVARLEPVLVGGVTVSNATLHNMDEIARKDIRIGDRVIVRRAGDVIPEVVGRAGGER
PADTRAIEMPTRCPECDSHIERPEGEAVARCTGGLVCPAQRREALKHFVSRRAMDIEGFG
EKLIEQLADGGIVQSPADLFALDTERLEALERVGPKLAENLVNALEQARETTLARFIFAL
GIREVGEVTARNLATYYGDLDTLMQADAEALQEVPDVGPIVAEHIANFFAEPHNLEVIRA
LREAGVHWPDPPARPAAEKGETAPLAGNTYVLTGSFDTMTREEAKAALEARGAKVTGSVS
KKTTAVIAGTDPGSKVTKAESLDIPILGPDDLAQLLA
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
gtgagctctccctccgcgtcccgggacggcacgacgggcgcggcgggggaggtaggcgag
cggatcgaacagctgcgccgccagatcgagcaccacaactaccgctattacgtcctcgac
gacccggaggtctccgacgccgagttcgacgccctgatgcgcgaactcgaacagctcgag
gccgatcaccctgacctcgtcacccccgactcgcccacacaacgggtcggcggagcgcct
gccgccggcttcgacaccgtgcgccatcgtctgccgatgctgtcgctggccaacggcttc
gagtccgacgaaatccgcgacttcgaccgtcgtgtacgcgagcgcctggccaaacagact
ggcgatcccgcgcgcgccgagcaggccgtcgcctacatggccgaacccaagctggacggc
ctggcgatcagcctgatctacgaaaacggccgcctggtgcaggccgccacgcgcggcgac
ggcgagaccggcgaggacgtgaccggcaatgtccgcaccgtgcggccgatcccgctgcat
ctgggcgatcgctatacggacgatgcccccggcgtgctcgaggtgcgcggcgaggtgttc
atgcgccgctcggacttcgaacgcctgaaccagggcctggaggccgatggccagcgcggc
ttcatgaacccccgcaacgccgccgccggcagcctgcgccagctcgatccgaaggtgacg
gcgcggcgcccgctgagcttctttgcctactccgtggggcatgtcgagggcggcacgctg
cccgacacacagtccggcacgctggattggctgcaccggctgggctttccggtctgcccc
gagcgggccgtgttggacggggtcgagggctgccttgcgtactacgaacgcctggccgag
cggcgccgcgagctggactacgagatcgacggcatcgtctacaaggtcgactcgctggct
gaccagcagcagctggggttcgtctcgcgcgcgccgcgctgggcgatcgctcacaagttc
ccggccgaggaacagacgacgaccctgcgcgccgtcgacttccgcgtcggccgcaccggc
gcgctgaccccggtcgcgcggctggagccggtgctggttggtggcgtgacggtcagcaac
gccacgctgcacaacatggacgagattgcgcgcaaggacatccgcatcggcgaccgcgtg
atcgtgcgccgtgcgggcgacgtcatccccgaggtggttggtcgcgccgggggcgagcgc
ccggcggacacccgtgccatcgagatgcccacccgttgcccggagtgcgactcgcatatc
gaacgcccggagggcgaggccgtggctcgctgtaccggcgggctggtctgccccgcgcag
cgccgcgaggccctcaagcacttcgtttcgcgccgcgccatggacatcgagggtttcggc
gaaaaactgatcgagcaactcgccgatggcggcatcgtgcaaagcccggcggatctgttc
gcactggataccgagcgcctggaggcgctggagcgggtcggtcccaagctcgccgagaat
ctcgtcaacgccctggaacaggcgcgcgagaccactctggcgcgtttcatcttcgccctc
ggcatccgcgaggtcggggaggtcaccgcacgcaacctggccacgtactatggcgacctg
gacacgctgatgcaggctgatgccgaggcgttgcaggaggtgccggacgttgggcccatc
gttgccgagcacatcgccaacttcttcgccgaaccgcacaacctcgaggtgatccgcgcc
ctgcgcgaggccggcgtgcactggcccgacccgcccgcgcgtccggcagcggagaagggc
gaaaccgccccgctggccggcaatacctacgtcctcaccggcagcttcgacaccatgacc
cgcgaggaggccaaggccgccctcgaggcccgcggcgccaaggtcaccggctccgtctcc
aaaaagaccaccgccgtcatcgccggcaccgaccccggctccaaggtcaccaaggccgaa
tccctcgacatccccatcctcggccccgacgacctcgcccagctcctcgcctga
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