Thioclava litoralis: RPE78_11585
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Entry
RPE78_11585 CDS
T10820
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tlb Thioclava litoralis
Pathway
tlb03030
DNA replication
tlb03410
Base excision repair
tlb03420
Nucleotide excision repair
tlb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tlb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RPE78_11585 (ligA)
03410 Base excision repair
RPE78_11585 (ligA)
03420 Nucleotide excision repair
RPE78_11585 (ligA)
03430 Mismatch repair
RPE78_11585 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tlb03032
]
RPE78_11585 (ligA)
03400 DNA repair and recombination proteins [BR:
tlb03400
]
RPE78_11585 (ligA)
Enzymes [BR:
tlb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RPE78_11585 (ligA)
DNA replication proteins [BR:
tlb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RPE78_11585 (ligA)
DNA repair and recombination proteins [BR:
tlb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RPE78_11585 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RPE78_11585 (ligA)
MMR (mismatch excision repair)
DNA ligase
RPE78_11585 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RPE78_11585 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
WRY33317
UniProt:
A0ABZ1DX08
LinkDB
All DBs
Position
2353187..2355310
Genome browser
AA seq
707 aa
AA seq
DB search
MNSSAIPPGDMTKDTAAREIADLSVRLERANTAYHTQDAPEISDAEYDAFKRRLLALEAQ
FPDLQRGDSPSQKVGAAPAEGFAKVRHEQRMMSLGNAFEDEDVEDFVRGIRKYLGLAADT
PLSFTAEPKIDGLSLSLRYEKGVLVYAATRGDGETGENVTENARTIPDIPQHLKDAPDLL
EVRGEVYMAHDDFAALNISQDERGEKRFANPRNAAAGSLRQLDPRVTARRPLKFFAYAWG
VLSAPLADTQSGAIKRLAELGFSTNPLTKTCSGSAQMIAQYHAIEADRAMLGYDIDGVVY
KVNDLALQARLGFRSTTPRWAIAHKFPAELAWTQLEKIEIQVGRTGALSPVARLTPVTVG
GVVVSNATLHNEDYIAGRDSKGEEIRGGRDIREGDWVQVYRAGDVIPKIADVDLARRAEG
LQPYEFPSKCPECGSDAIREEGDAVRRCTGGLICPAQQVEKLKHFVSRAAFDIDGLGAKQ
VEAFYEDGWVREPVDIFTLRDRYGPGQVRQLKNRDGWGEKSALKLFDAIDQRRDIALARV
IFALGIRHVGEQTATLLARHYGTWPSFEAAMTQADPKGNAAWEDLLGIDGVGKVLAESLV
STFHQEAERGSIDRLIAQLRVQEAEKPKNDSEIAGLTIVFTGTLEKMTRSEAKARAEALG
AKVAGSVSKKTDILVAGPGAGSKATKAADLGVRVIDEDAWLVMAGQG
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgaattcttccgccattccccccggtgatatgacaaaagatacggcggcacgcgagatt
gcggacctatcggtgcggcttgaacgggcgaatacggcgtatcacacgcaggatgcgccg
gagatttctgacgccgaatatgatgcgtttaaacgccgccttcttgcattggaggcgcaa
ttcccggatctgcaacgtggcgacagcccgtcccagaaagtaggcgcggccccggcggaa
gggtttgcgaaggtccggcatgaacaacggatgatgagcttgggcaatgccttcgaggat
gaagatgtcgaggattttgtccgtggcatccggaaatatctcggattggcagcggatacg
cccttgtcttttaccgcagagccaaaaattgacgggctatcgctttcgttgcgttatgaa
aaaggtgtgcttgtttacgctgcaacgcgtggcgatggggaaacgggtgaaaacgttaca
gaaaatgcgcggacgattcccgatattccgcagcatttgaaagatgcgccggatctcctt
gaggtgcgcggcgaggtgtatatggcgcatgacgattttgcggcgctcaatatctcgcaa
gatgaacggggcgagaaacgttttgccaatccgcggaatgccgccgcagggtcgttgcgc
cagctggatccgcgggtcaccgcacgcagaccattgaagttttttgcctatgcttggggg
gtgctgtcggctcctcttgcagatacccaaagcggagcgatcaagcgtttggccgaactt
ggtttttcgacgaatccgctgaccaagacctgttccggatcggcgcagatgattgcccag
tatcatgcgatcgaagcagatcgggcgatgctcggctatgatattgacggtgtcgtctat
aaggtcaacgaccttgcgttgcaggctcggctaggctttcgttcgacaacgccgcgttgg
gcgatcgcacataaattccctgccgaactggcatggacccaacttgagaagatcgagatt
caggtggggcggactggtgcactcagtcccgtggcgcgtctgacaccggtcacggttgga
ggtgtggttgtctccaacgcgaccttgcataacgaagactatattgcagggcgcgattcg
aaaggcgaagagatccgtggcgggcgcgacatccgcgagggggattgggtgcaggtttat
cgcgcaggcgatgtgatcccgaaaattgcggatgtggatcttgcgcgtcgcgcggaaggt
ctgcaaccctatgaatttccttcgaaatgccctgaatgtggttcggacgccattcgcgag
gaaggggatgcggtgcgtcggtgcaccggcggattgatctgtccggcgcagcaagttgaa
aagctcaagcattttgtctcgcgcgctgcgttcgatattgacgggcttggcgccaaacag
gttgaggcgttttatgaagatggctgggtcagggaacctgtcgacattttcactctgcgg
gacagatatgggccgggtcaggtgcggcaattgaaaaatcgcgatggttggggggagaaa
tccgcgctcaaactgtttgacgcgattgaccagcggcgtgatatcgcgcttgcgcgtgtg
atctttgctttggggatccgtcatgtgggagaacagaccgcgacgttgctggcgcgccat
tatggcacatggccgtctttcgaagccgcaatgacgcaggccgatccgaaaggcaatgca
gcctgggaggatctgcttggcattgacggtgttggcaaggttcttgccgaaagtctggtg
agcaccttccatcaggaagccgagcgcgggtcgattgaccgtctgatcgcgcagcttcgg
gtgcaagaggccgaaaagccgaaaaatgatagcgaaatcgcagggttgacgatcgtattt
accggaacgcttgaaaagatgacacgttcggaagccaaggcgcgggccgaggcgctgggg
gcaaaagtggcggggtccgtgtcgaagaagaccgatatccttgtggccggtccgggggcc
ggatccaaggcaaccaaagcggcagatcttggtgtgcgggtgattgatgaggatgcgtgg
ctggttatggccgggcaaggctga
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