Thiothrix lacustris: RCF98_00240
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Entry
RCF98_00240 CDS
T09396
Name
(GenBank) efflux RND transporter periplasmic adaptor subunit
KO
K03585
membrane fusion protein, multidrug efflux system
Organism
tlc
Thiothrix lacustris
Pathway
tlc01501
beta-Lactam resistance
tlc01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
tlc00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
RCF98_00240
01503 Cationic antimicrobial peptide (CAMP) resistance
RCF98_00240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tlc03036
]
RCF98_00240
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
tlc02000
]
RCF98_00240
01504 Antimicrobial resistance genes [BR:
tlc01504
]
RCF98_00240
Chromosome and associated proteins [BR:
tlc03036
]
Prokaryotic type
Chromosome partitioning proteins
Divisome proteins
RCF98_00240
Transporters [BR:
tlc02000
]
Other transporters
Accessory factors involved in transport [TC:
8
]
RCF98_00240
Antimicrobial resistance genes [BR:
tlc01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
RCF98_00240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HlyD_D23
HlyD_3
Biotin_lipoyl_2
Biotin_lipoyl
HlyD_2
Vps5
OEP
DUF2969
Motif
Other DBs
NCBI-ProteinID:
WML90797
LinkDB
All DBs
Position
complement(59052..60143)
Genome browser
AA seq
363 aa
AA seq
DB search
MKMLPKWVLIVGLSALSACGKAEQQTATATDAPVKSTLQTVKVGEVGTPELHYLDGHVEA
VNESTLSAQTSGVIEKLFYDVDDFVEPGKMIARIKSNNQQAGVAQAQASLDEAQARFTEA
QTDFKRISDIYAKRLIPKADYDTSQANLRAAEARLAAAKAQITQAGEELGYTSLVAPFGG
IVTKRHVQLGETVNPGTPIMTGISLDQMRVVVEVPQRLIGKVREEKKAFVFQDGSNKSLA
VKSLTFFPYADPKTNAFKVRIDLTEGAKDLFPGMFVKVAFVIGKQQGVVSVPESAVVIRS
EVIGVYVINAQGRPALRQIRLGKKLDENTISVLAGVDAGETIALDPVQAAISLKQQEGVK
HDE
NT seq
1092 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgttaccaaagtgggtactgatcgtcggattgtcagccttgtctgcttgcgga
aaagcagagcagcaaacggctaccgcaacagatgcacctgtgaaatcgaccttgcaaacc
gttaaggtcggtgaggtcggtacacctgaattgcattatctggatggtcatgtagaagcc
gtgaatgaaagcacgctgtctgcccagaccagcggggtgattgaaaaattattttacgat
gtggatgattttgtagagccgggcaagatgattgcccgcatcaagtcaaataatcaacaa
gctggcgtggcgcaggcgcaagcatctctggatgaggcgcaagcccgtttcaccgaagca
caaactgacttcaaacgtatcagtgatatttatgctaagcgtctgattccaaaagccgat
tatgatacgtctcaggccaacctgcgggctgctgaagcgcgtttggcggcggcgaaagcg
caaattacccaagccggtgaagaactgggttataccagtttggttgcacctttcgggggt
attgtgaccaagcgccacgtgcaactcggcgagaccgttaaccccggtacgccgatcatg
accggcatttcactcgaccaaatgcgggtcgtggtggaagtgccacagcgtctgattggc
aaggtacgtgaggaaaagaaagccttcgtatttcaggatggttccaacaaatcactggca
gtcaagtcgttaacatttttcccgtatgccgaccccaaaaccaatgcattcaaggtgcgg
attgatctcacggaaggcgcgaaagacctgttccctggtatgtttgtgaaagtagcgttt
gtgatcggtaagcagcaaggtgtggtcagtgtgccggaaagtgcagtggtaatccgtagc
gaggttattggtgtgtatgtaatcaatgcacaaggccgacctgctttacgtcagatccgc
ctgggaaaaaagctggatgaaaataccatcagtgtattggcgggtgtcgatgcaggggaa
actattgcgcttgacccggtacaggcagccatttccctcaagcagcaagagggggtaaag
cacgatgaatga
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