Thiothrix lacustris: RCF98_14570
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Entry
RCF98_14570 CDS
T09396
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tlc
Thiothrix lacustris
Pathway
tlc03030
DNA replication
tlc03410
Base excision repair
tlc03420
Nucleotide excision repair
tlc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tlc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RCF98_14570 (ligA)
03410 Base excision repair
RCF98_14570 (ligA)
03420 Nucleotide excision repair
RCF98_14570 (ligA)
03430 Mismatch repair
RCF98_14570 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tlc03032
]
RCF98_14570 (ligA)
03400 DNA repair and recombination proteins [BR:
tlc03400
]
RCF98_14570 (ligA)
Enzymes [BR:
tlc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RCF98_14570 (ligA)
DNA replication proteins [BR:
tlc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RCF98_14570 (ligA)
DNA repair and recombination proteins [BR:
tlc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RCF98_14570 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RCF98_14570 (ligA)
MMR (mismatch excision repair)
DNA ligase
RCF98_14570 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RCF98_14570 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
DUF6885
Motif
Other DBs
NCBI-ProteinID:
WML90185
LinkDB
All DBs
Position
2979553..2981562
Genome browser
AA seq
669 aa
AA seq
DB search
MQAIEIQLETLREQLRYHNHRYYVMDDPVVPDVEYDRLFRELQALEAEHPELVPPDSPTQ
RVGGAALSEFGEVKHAIPMLSLGNVFSEAELLAFDKRIHDRLKSAAEIEFVAEPKLDGLA
ISIRYEHGVLTQAATRGDGETGEDVTHNVRTIASVPLRLMGEGWPDVLEVRGEIYMPKAG
FEAFNAKMRALGEKTFVNPRNAAAGSLRQLDPRLTAKRPLDIFCYAVGLVEGGAVPDTHY
AILQQFRTWGLRVCPDIRIVQGAQGCLEYFGEIGARRNSLPYDIDGVVYKVNAITLQQEL
GFISRAPRWAMAHKFPAQEEVTVLEGIEFQVGRTGALTPVARLKPVFVGGVTVSNATLHN
MDEIERKDVRIGDSVIVRRAGDVIPEVASVILERRPEGAVPIVMPVHCPVCGSEVKRPEG
EAVARCTGGLYCPAQVKEAIKHFASRKALNIDGLGDKMVEQLFDAGLIRHVDDLYSLDVA
AVAGLERMGKKSAENLIAALESSKSTTLERFIYGLGIRNAGEGTAKGLSRHFGSLEAIQA
ASEETLKLVPDIGVIVAANVAQFFSEAHNRETIQHLRDLGVHWPDYEAKPPEALPLAGKT
YVITGTLSRSRDDIKADLEALGAKVSNSVSKKTTALIAGESAGSKLDKAQSLGVDVLDEA
ALSVLLSRL
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgcaagccattgagatacagcttgaaaccctacgggaacaactgcgttatcacaaccat
cgctactatgtgatggatgacccggttgttcctgatgtggaatatgatcgtctgttccgt
gaactacaggcgctcgaagctgagcacccggagctggtgccccccgattccccgacccag
cgtgttgggggcgcagcgttaagtgaattcggcgaagtcaaacacgcgattccgatgctg
tcgctgggcaacgtgttcagcgaggcggaattactggcgttcgataaacgtatccacgac
cgcctgaaatcggctgcggaaatcgaattcgttgccgaacccaagctcgatggccttgcg
atcagcattcgctacgaacacggcgtgctcacgcaggcagccactcgtggtgatggcgaa
acgggtgaagatgttacccacaatgtgcgtaccattgcctcggttccgctgcggctgatg
ggtgaaggttggcctgatgtgctggaagtacgtggcgaaatttacatgcccaaagccggg
tttgaagcctttaatgccaaaatgcgggcgctgggtgagaaaacttttgttaacccgcgc
aacgcggcagcgggtagtttgcgccagcttgatccgcgtttgacggcaaagcgcccgctg
gatattttctgctatgccgttgggttggtggaaggtggagcagtgcccgatacccattac
gcgattctgcaacaattccgtacatggggtttgcgggtgtgccctgatattcgcattgtg
cagggggcgcaaggttgtctggaatacttcggtgagatcggcgcaaggcgtaacagtttg
ccgtatgacattgacggtgtggtttacaaggtcaatgccatcacgcttcagcaggaactc
ggtttcattagccgcgccccgcgttgggcgatggcgcacaagtttcccgctcaggaagaa
gtgactgtgctggaaggcattgagtttcaggtcgggcgtactggcgcactcacgccggtt
gctcgcctcaaacccgtgttcgttggcggtgtgaccgtcagcaatgccaccttgcacaat
atggacgaaatcgaacgtaaggatgtgcgtatcggtgactcggtgatcgtgcgcagggca
ggggacgtgattcccgaagtggccagtgtcatcctcgaacgccgcccggaaggtgctgta
ccgattgtgatgcctgtccattgcccggtgtgcggttcggaggtgaagcgcccggaaggt
gaagcagttgcgcgttgcacaggcggtttgtattgccccgcgcaagttaaagaggcgatc
aagcacttcgcttcacgcaaagccctgaatatcgacggcttgggtgacaaaatggtggag
caactgtttgatgcgggcttgatccgtcacgtggatgacctctatagcctggatgttgca
gccgtggcaggtttggagcgcatgggcaagaagtctgccgaaaacctcattgccgcgctg
gaaagcagcaaatccaccacgctggaacgctttatttacgggctaggcattcgcaacgca
ggcgagggaacggctaaagggctttcgcgccatttcggttccttggaggcgatacaggct
gctagcgaagaaaccctgaagctggttcccgatattggtgtgattgttgcggcgaatgtc
gcccagttcttcagcgaagcccacaaccgcgaaaccatccagcatttgcgggatttgggc
gtccattggcctgattacgaagccaaaccgccagaggctttacccttggctggcaagact
tacgtcattacgggcacgcttagccgttcccgcgatgacattaaggccgatctggaggcg
ctgggtgcgaaagtctccaacagtgtttcgaaaaagaccacggcgctgattgcgggggaa
agtgctggttccaagctcgataaagctcaaagtttgggtgtggatgtgctggatgaggcc
gctttgtcggtcttattgagccgcttatga
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