Thermovirga lienii: Tlie_1254
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Entry
Tlie_1254 CDS
T01644
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tli
Thermovirga lienii
Pathway
tli03030
DNA replication
tli03410
Base excision repair
tli03420
Nucleotide excision repair
tli03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Tlie_1254
03410 Base excision repair
Tlie_1254
03420 Nucleotide excision repair
Tlie_1254
03430 Mismatch repair
Tlie_1254
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tli03032
]
Tlie_1254
03400 DNA repair and recombination proteins [BR:
tli03400
]
Tlie_1254
Enzymes [BR:
tli01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Tlie_1254
DNA replication proteins [BR:
tli03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Tlie_1254
DNA repair and recombination proteins [BR:
tli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Tlie_1254
NER (nucleotide excision repair)
GGR (global genome repair) factors
Tlie_1254
MMR (mismatch excision repair)
DNA ligase
Tlie_1254
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Tlie_1254
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
5_3_exonuc
HHH_8
BRCT_2
HHH_3
zf-NADH-PPase
GFRP
DUF4796_N
Bep_C_terminal
Motif
Other DBs
NCBI-ProteinID:
AER66985
UniProt:
G7V5S5
LinkDB
All DBs
Position
complement(1309616..1311664)
Genome browser
AA seq
682 aa
AA seq
DB search
MDKELARKRIEELRKEIEKHDYLYYVLDQPEITDEEYDRLLLELKELEDAFPEFVSPESP
TQRVGGIPREEFSKVSHEVPMLSLENAFSKEQLSQFFARAENILGTHIPSYCCEPKIDGL
AVSLRYEDGVFVGGATRGDGLVGEDVSENLKTIRSIPLRLKIKVEGFLEVRGEVFMSKKS
FQELNEAREEEGLPLFANPRNAASGSLRQLDPSVTAKRKLGFFAYQIVNPSTLGLKSQWE
TLQWLKEAGFLIQGEERKVTSLEDVWDYILKLQERRHQLSYVIDGAVIKIDDISLWEKAG
RTAKAPRWAVAYKFPAEEKLTKVKDILISVGRTGALTPVAILEPVTISGSVVQRASLHNA
DEVQRKDVRIGDFVWVRKAGEVIPEVVRVEKTKRPEGTLPFRMPQVCPVCGSHTIRLPGE
VVIRCPNRSCPAQILEGLKHFVSRAGMDIRGLGDKIIRKLVEEKIVSDFADLYHLDVHTL
ANLTLTGERNERKVGKKTAEAILKAIEASKKRPLRKLISALGIRYVGEKVAEELANHFGS
MDALMKTDEETLSKVPGVGSKIASSIYAFFRDENNLKLIDRLKQAGVLMEEKSKEKVTTG
PLTGNTFVFTGELKRAKRHEAEEIVKSLGGKASSSVSSKTTFVVVGENPGSKLQKAQSLG
VKILTEEEFWNMVKENAPGGGL
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atggataaggagctggcccggaagagaatagaagaattaagaaaagagatagaaaaacat
gattacttatattacgtcttggatcagcctgaaataactgatgaagaatatgacagactc
ctgcttgaactaaaagagcttgaagatgcgttccctgagtttgtgtcaccagagtcccct
acccaaagggtagggggcattccccgtgaggaattttccaaggtaagccatgaagttccc
atgctaagcctagagaacgctttttccaaggagcagctgagtcagttctttgctagggct
gaaaacattttggggactcatatcccctcgtattgctgtgaacccaagatagatggtctg
gctgtgtctttgagatatgaagacggggtttttgtgggtggagcgaccaggggagacggg
ttggtaggagaggacgtaagtgaaaacttgaagactataagatcaatccccttacggctc
aagatcaaggtagagggtttccttgaagtgcggggagaagtttttatgagcaaaaagagt
ttccaagagctcaatgaagctagggaggaagaaggacttcccttgttcgccaaccctcga
aatgcagcgtctggtagcttgaggcagctggaccccagtgtcaccgccaagagaaaactt
ggtttttttgcctatcaaatagttaacccctccacattaggtttaaagagtcaatgggag
acccttcagtggctgaaagaagcaggttttttgattcagggcgaagaacgaaaggtcaca
tctctagaagatgtttgggactatatattaaaactgcaggaacgaagacatcagttgtca
tacgtaatagatggggcggtcataaagatcgatgatatctctctctgggaaaaagcgggc
aggactgcaaaggccccgaggtgggccgtggcctataaattccctgcggaggagaaattg
accaaggtgaaggatatattgatctccgtaggtagaacgggtgctcttacgcctgttgcg
atccttgagcctgtcaccataagtggtagcgttgttcagagggcaagcttacataacgct
gacgaagttcaaagaaaagatgtcaggatcggggactttgtttgggtacgaaaggcagga
gaggtaattcctgaggtggtcagggtagaaaaaactaaaagacccgagggtaccttgcct
ttcagaatgccccaagtatgccccgtctgtggttcccacactatcaggctgcctggcgag
gtcgttattaggtgtcccaacagatcctgtccagctcaaatattggaagggctcaagcat
tttgtctccagggccggaatggatattagagggttgggagataagataataagaaaacta
gtggaggaaaagatagtttcagactttgcggatctgtatcatttggatgttcacacatta
gctaatttgaccttgacaggcgaacgtaacgaaaggaaggttggcaagaaaactgctgaa
gctatattgaaggccatagaagcctccaaaaagagacctttgcgaaagcttatttctgcc
ttgggaatcaggtacgttggagagaaggtggcagaggagttggcaaatcattttggcagc
atggatgcccttatgaagaccgatgaagaaaccctttcaaaagtgcctggagtaggaagc
aaaatagcttcatcaatatatgcgttctttagagacgagaacaatttgaagctcatagat
aggttgaaacaggcaggggttctcatggaagaaaagagcaaagaaaaagttaccactggc
cccttgactggaaacacgtttgttttcactggggaactcaagagagcgaaaagacatgag
gcggaggagatcgtaaaatcactaggaggcaaagcgtcttccagcgtgagttccaaaacc
acttttgtggttgtaggagaaaacccaggaagcaagcttcagaaggcccaaagccttgga
gtcaagattttaacggaagaggagttttggaacatggttaaagaaaatgctccaggagga
ggtttataa
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