Candidatus Tyloplasma litorale: TYPL_0830
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Entry
TYPL_0830 CDS
T09841
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tll
Candidatus Tyloplasma litorale
Pathway
tll03030
DNA replication
tll03410
Base excision repair
tll03420
Nucleotide excision repair
tll03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tll00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TYPL_0830 (ligA)
03410 Base excision repair
TYPL_0830 (ligA)
03420 Nucleotide excision repair
TYPL_0830 (ligA)
03430 Mismatch repair
TYPL_0830 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tll03032
]
TYPL_0830 (ligA)
03400 DNA repair and recombination proteins [BR:
tll03400
]
TYPL_0830 (ligA)
Enzymes [BR:
tll01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
TYPL_0830 (ligA)
DNA replication proteins [BR:
tll03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TYPL_0830 (ligA)
DNA repair and recombination proteins [BR:
tll03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
TYPL_0830 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TYPL_0830 (ligA)
MMR (mismatch excision repair)
DNA ligase
TYPL_0830 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TYPL_0830 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
BDU67430
LinkDB
All DBs
Position
90141..92129
Genome browser
AA seq
662 aa
AA seq
DB search
MKKIENKINNLVKMLNKWNYDYYVNDNPIVDDIIYDEKLSELFQLEKQYPHLIREDSPTQ
TVGKIASSSFKKTKHMIPMLSLKNAFNEGDLMHFNKQIIEFDYKGDYFVEPKIDGLSLSL
IYEKGHLIKAVTRGDGNIGEDVTNNAKQISNIPLTINYKKNIEIRGEVYIGVDQFKKINE
ERRNNDEKLFANPRNAASGTMRQLDVLKVKQRGLKMIAYWAMNDEKTFSWKTQEETIINL
EKLGFKTSELSVKILNIEDVISIIKKIEEKRYSLEYEIDGVVIKVNEYSFYEKIGYTSKF
PKWAIAYKLPGEIKVSTLLNIFQTIGRTGRVTYNAQLSGVQLAGTWVQRATLHNADYIKD
LDLRIGAQVKVKKAGDIIPKVISAIKDDSFFKLKKWKEDKKCKICGNKLSRTENEVDQYC
INVDCPARMEESIIHFVSREAMNIKGLSTQQIKKFIELKFISEFSDIYYLKNKKEEILKL
DGYQERSVNSLLNSIEESKKVSLDKFIFALGIRHIGKKTSKDLAKIFGSIEAMSKLKVEN
LIEQEDFGEVKSNSIISYFKDENNKKKLNNLVSAGLNPIFISSKKENDSILFGKKIVITG
KIENMNREEAKEYFENLGAIVLSTISKNIDYLVIGEKPSLLKMSKVSKDKIINFNEIKKI
IV
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaatagaaaataaaataaataatttagttaaaatgcttaataaatgaaattat
gattattatgttaatgataatcctattgttgatgacataatttatgatgagaagctttca
gaattatttcaattagaaaaacaatatcctcatttaataagagaagattcacctacacaa
acagtaggcaaaattgcatcttcttcattcaaaaaaacaaaacatatgattccaatgctt
tctttaaaaaatgcttttaatgaaggtgatttaatgcattttaataaacaaataattgaa
tttgattataaaggagattattttgttgaacccaaaattgatggtttgtcactttcgtta
atttatgaaaaaggtcacttaataaaagcagtaactagaggtgatggaaatattggtgaa
gatgttactaataatgctaaacaaatttctaacattcctttaacaattaattataagaaa
aacatagaaattagaggtgaagtttatataggtgttgatcaatttaaaaaaataaatgaa
gaaagaagaaataatgatgaaaaactttttgcaaatccaagaaatgctgcttcaggaaca
atgagacaattagatgttttaaaagtaaaacaaagaggattaaaaatgattgcttattga
gcaatgaatgatgaaaaaactttttcatgaaaaacacaagaagaaacaattattaattta
gaaaaattaggttttaaaacttctgaattatcagttaaaattcttaacattgaagatgtt
atttctataattaaaaaaattgaggaaaaaagatattcattagaatatgaaatagatggt
gttgttattaaagttaatgaatattctttttatgaaaaaattggttatacttctaaattt
cccaaatgagcaattgcttataaattaccaggagaaattaaagtatctacacttttaaat
atatttcaaacaataggaagaacaggtagagtcacttataatgcccaattgagtggagtt
caactagctggtacttgagttcaacgggcaactttacataatgctgattatataaaagat
cttgatttaagaataggagcacaagtcaaagttaaaaaggcaggagatataattccaaaa
gtaatttccgcaataaaagatgattcattttttaaattgaaaaagtgaaaggaagataaa
aaatgtaaaatttgtggtaataaattatcaaggacagaaaatgaagttgatcaatattgt
attaatgttgattgtccagctagaatggaagaatctattattcattttgtttcaagagaa
gcaatgaatataaaaggtttatcaacacaacaaataaaaaaatttattgaattaaaattt
atttctgaattttcagatatttattatttaaaaaataaaaaagaggaaattcttaaattg
gatggctatcaagaaagatctgttaattcattattaaattcaatagaggaatcgaaaaaa
gtttctttagataaatttatttttgctttaggaattagacatattggaaaaaaaacttct
aaagaccttgctaaaatatttggttctattgaagcaatgtcaaaattaaaagttgaaaat
ttaattgagcaagaagattttggtgaagttaaatccaattctataatttcttattttaaa
gatgaaaataataagaaaaaattaaacaatcttgtttcggctggcttaaatcctattttt
atttcttctaaaaaagaaaatgatagtattttatttggcaaaaaaatagttattacagga
aaaatagaaaatatgaatagagaagaagctaaagaatattttgaaaatttaggagcgata
gttctttcaacaattagtaaaaatattgattatttagtgattggtgaaaaaccttcttta
ttaaaaatgagtaaggtttcaaaagataaaataataaattttaatgaaattaaaaaaata
atagtatag
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