Temnothorax longispinosus: 139816485
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Entry
139816485 CDS
T10889
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
tln Temnothorax longispinosus
Pathway
tln03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tln00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139816485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tln03041
]
139816485
Spliceosome [BR:
tln03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
139816485
Complex C
U5 SnRNP specific factors
139816485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
Ras
Motif
Other DBs
NCBI-GeneID:
139816485
NCBI-ProteinID:
XP_071640102
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All DBs
Position
7:22274535..22278918
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AA seq
981 aa
AA seq
DB search
MDTDLYDEFGNYIGPDLASESEDENEYSNVGDDTEDRERSDEEMEEDKDESREQVDQGSS
MAVVLHEDKRYYPSALEVYGPEVETLVQEEDAQPLDKPLIAPTRKAKFQIKQQQLPETTY
SIEFLADMMDAPHLIRNVVLLGHLHHGKTTLVDCLVQQTHPYIHSTTDEKPLRYTDTLFT
EQQRGVSTKATPVTLLLQDVKSKSYLLNIFDTPGHVNFSDEATAAIRLSDGAILIVDAAE
GVMLNTERLLKHAIQEKLALTVCINKIDRLVLELKLPPLDAYYKLRHIIEEINGLIALYS
SDTENPGFVSPAVGNVCFASSEYNVCFTLKSFAALYTRNYPGLNANEFAKRLWGDIYFNP
KTRKFTKKPPHNTAQRSFIEFILEPLYKIFAQVVGDVDTTLPDVLDELGIRLTSEEMKMN
IRPLLRLVCTRFLGDMCGLVDMCVTHVPSPQAHAPTKVQHVYTGPMDSPLTQDMVNCDPD
GRLMIHSTKMYPTEDCTLFVVLGRVMSGTLEAGQRVRVLGEAYSRTDEEDSRVLTVGRLW
ISEARYSIELSRVPAGNWVLIEGIDRPIVKTSTITDLNNSEELHIFRPLKFNTQSVIKIA
VEPVNPSELPKMLDGLRKVNKSYPLLGTRVEESGEHVVLGTGELYLDCAMHDLRRMYSEI
DIKVADPVVAFAETVVETSSLKCFAETPNKRNKLTMIAEPLERGLAEDIEAEHVRITWNK
KRLGEFFQTKYDWDLLAARSIWAFGPDSTGPNILVDDTLPSEVDKTLLNSARDAIIQGFQ
WGTREGPLCEEPIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPY
LFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHT
QGQAFCLSVFHHWQIVPGDPLDKSITIRPLEPQPATHLAREFMLKTRRRKGLSEDVSINK
FFDDPMLLELARQDVLLNYPL
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atggacacggatttatacgatgagtttggaaattatattggtcctgatctggcgtcggag
agcgaggatgaaaatgaatatagcaatgttggcgatgacaccgaggatagagaacgatcg
gatgaagaaatggaagaagacaaggatgagtcacgagagcaagtggaccaaggctcttct
atggcggttgtattgcacgaagataagcgatattatcccagtgccctagaggtgtatgga
cctgaggtagaaacgcttgtgcaagaagaagatgcccaaccgttagataaaccactaata
gcacctactagaaaagcaaagtttcaaataaaacagcaacagttgcctgaaacgacgtat
agcattgaatttttagcagatatgatggatgcgccgcatcttattagaaatgtagttttg
ctgggacatcttcatcatggcaaaactaccttagtcgattgcttggtacaacaaacgcat
ccttatatacacagcacaaccgatgagaaaccattgagatacacagatacattatttacc
gagcaacaaagaggcgtctccacgaaagctactcccgttactctcttgctgcaagatgtt
aaatctaaatcatatcttttaaatatatttgatacaccgggccacgtgaatttctctgac
gaagcgacagctgcaatccgattgtcggacggcgcgatattgatcgttgacgcggcggag
ggcgtgatgctcaacaccgaacgtctgctgaagcacgcgattcaggaaaaactcgctttg
acagtttgcataaataagattgatcgtttggtattggagttgaaactaccacccttggac
gcttactacaaattacggcatattattgaggagatcaacgggctaatagcattgtactct
tcggataccgagaaccctggctttgtttcgcctgccgtaggaaatgtttgttttgctagt
tccgaatataatgtgtgctttactttgaaatcatttgccgcgctctacactaggaactat
cctggacttaatgccaacgaattcgccaaacgactctggggtgatatttatttcaaccct
aaaacacggaagtttactaagaaaccgccgcataatactgcgcagcgaagttttattgaa
tttatcctggaacctctgtataagatattcgcgcaagtcgtcggtgatgtagacacaaca
ttacccgatgttttggacgaactcggaatacgattgacatccgaggagatgaaaatgaat
atacgaccattgctgagacttgtctgcacgagattcttaggagatatgtgcggattagtg
gatatgtgtgtcactcatgtaccaagcccgcaagcacacgcacctactaaagtacagcac
gtctatactggcccgatggattcgcctctcacgcaagacatggttaactgcgatcccgac
ggaagactaatgatccatagtacaaagatgtatccaaccgaggattgtaccctatttgta
gttcttggcagagtaatgtccggtacattggaagcaggacaacgcgttcgcgtattaggt
gaagcgtattcacgcacagacgaggaggactcgcgcgttctcacagtgggcagattgtgg
atcagcgaggcgcgttactcgatagagttgagtcgcgtgcctgcgggcaactgggtcctc
atagaaggtatcgatcggccgatcgtaaagactagcaccatcacggatctaaataactcg
gaagaattgcacatctttcggccactcaagtttaatacgcagagtgttatcaaaattgcc
gtcgaaccggtcaatccatccgagttgccgaagatgttggacggtttgcgaaaggtaaac
aagagctatccgctactgggtacgcgagtggaggaaagcggcgagcatgtcgtgctggga
accggtgaactttatctcgactgcgcgatgcatgatctgcgtcgcatgtattccgagatc
gacataaaggtggccgatccggtggtcgccttcgcggaaactgtcgtggaaaccagttcc
ctcaaatgctttgctgaaacgccaaataaacggaacaaattgacgatgatagcagaaccg
cttgagaggggtctcgccgaagacatagaagccgaacatgtccgtattacttggaacaaa
aagagacttggagagtttttccaaacaaaatatgattgggatttattagcagcgcgaagt
atatgggcattcggtcccgactctacgggacccaacattttagtggacgacactctgcct
tccgaagtagataaaacattgttgaacagcgcccgtgatgctatcatccaaggcttccaa
tggggaactcgcgaaggtccgttatgtgaagagccgatccggaatgtcaagttcaaaatt
cttgatgcagtcatcgcacaggagccgttgcatagaggaggtggtcaaatcatccctact
gctcgacgtgtcgcgtattccgctttcctcatggcgactccgcgactgatggagccgtat
ctgtttgtcgaggtacaagcgcccgcggactgcgtgtccgccgtttataccgttctggcg
aaaaggcgaggtcacgtgacgcaggatgccccggttccgggcagtccgttgtatacgatc
aaggccttcataccagcgatcgacagtttcggcttcgagacagatctacgaacgcacact
caaggtcaagcgttttgcctgtccgtttttcatcattggcagatcgtgcccggagatccc
ctggacaaaagcatcaccatcaggccgttggaaccgcagccagccacccatctggccaga
gagttcatgctgaaaacgcgaagacgcaagggactgtccgaggacgtgtccatcaacaag
ttcttcgatgatcctatgctgctcgagttggcccggcaggatgtgctactaaattatccc
ctctaa
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