Thiothrix litoralis: J9253_09910
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Entry
J9253_09910 CDS
T07754
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tlo
Thiothrix litoralis
Pathway
tlo03030
DNA replication
tlo03410
Base excision repair
tlo03420
Nucleotide excision repair
tlo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tlo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J9253_09910 (ligA)
03410 Base excision repair
J9253_09910 (ligA)
03420 Nucleotide excision repair
J9253_09910 (ligA)
03430 Mismatch repair
J9253_09910 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tlo03032
]
J9253_09910 (ligA)
03400 DNA repair and recombination proteins [BR:
tlo03400
]
J9253_09910 (ligA)
Enzymes [BR:
tlo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
J9253_09910 (ligA)
DNA replication proteins [BR:
tlo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
J9253_09910 (ligA)
DNA repair and recombination proteins [BR:
tlo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
J9253_09910 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
J9253_09910 (ligA)
MMR (mismatch excision repair)
DNA ligase
J9253_09910 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
J9253_09910 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
DUF6885
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QTR48197
UniProt:
A0ABX7WYT0
LinkDB
All DBs
Position
complement(2043941..2045950)
Genome browser
AA seq
669 aa
AA seq
DB search
MQAIEIQLETLREQLRYHNHRYYVMDDPVIPDVEYDRLFRELQVLEAEHPERVTPDSPTQ
RVGGAALSEFGEVKHAIPMLSLGNVFSETELLAFDKRIHDRLKSAAEIEFVAEPKLDGLA
ISIRYEHGVFTQAATRGDGETGEDVTHNVRTIASVPLRLMGEGWPDVLEVRGEIYMPKAG
FEAFNAKMRALGEKTFVNPRNAAAGSLRQLDPRLTAKRPLDIFCYAVGLVEGGAVPDTHY
AILQQFRTWGLRVCPDIRIVQGAQGCLEYFGEIGARRNSLPYDIDGVVYKVNAITLQQEL
GFISRAPRWAMAHKFPAQEEVTVLEGIEFQVGRTGALTPVARLKPVFVGGVTVSNATLHN
MDEIERKDVRIGDSVIVRRAGDVIPEVASVILERRPEGAVPIVMPVHCPVCGSEVKRSEG
EAVARCTGGLYCPAQVKEAIKHFASRKALNIDGLGDKMVEQLFDAGLIRHVDDLYSLDVA
AVAGLERMGKKSAENLIAALESSKSTTLERFIYGLGIRNAGEGTAKGLSRHFGSLEAIQA
ASEETLKLVPDIGVIVAANVAQFFSEAHNRDTIQHLRDLGVHWPDYEAKPPEALPLAGKT
YVITGTLSRSRDDIKADLEALGAKVSNSVSKKTTALIAGESAGSKLDKAQSLGVDVLDEA
ALSVLLSHL
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgcaagccattgagatacagcttgaaaccctacgggaacaactgcgttatcacaaccat
cgctactatgtgatggatgacccggttattcctgatgtggaatatgatcgtctgttccgc
gaattacaggtgctcgaagctgagcacccagaacgggtgacccccgattccccaacccag
cgtgttgggggcgcagcgttaagtgaattcggcgaagtcaaacacgctattccgatgttg
tcgctgggcaacgtgttcagcgagacggaattactggcgttcgataaacgtatccacgac
cgtctgaaatcggctgcggaaatcgaattcgttgccgaacccaagctcgatggccttgcg
atcagcattcgctacgaacacggtgtgttcacgcaggccgccactcgtggtgatggcgaa
acgggtgaagatgttacccacaatgtgcgtaccattgcctcggttccgctgcggctgatg
ggtgaaggttggcctgatgtgctggaagtacgtggcgaaatttacatgcccaaagccggg
tttgaagcctttaatgccaaaatgcgggcgctgggtgagaaaacttttgttaacccgcgc
aacgcggcagcgggtagtttgcgccagcttgatccgcgtttgacggcaaagcgcccgctg
gatattttctgctatgccgttgggttggtggaaggtggagcagtgcccgatacccattac
gcgattctgcaacaattccgtacatggggtttgcgggtgtgccctgatattcgcattgtg
cagggggcgcaaggttgtctggaatacttcggtgagatcggcgcaaggcgtaacagtttg
ccgtatgacattgacggtgtggtttacaaggtcaatgccatcacgcttcagcaggaactc
ggtttcattagccgcgccccgcgttgggcgatggcgcacaagtttcccgctcaggaggaa
gtgactgtgctggaaggcattgagtttcaggtcgggcgtactggcgcactcacgccggtt
gctcgcctcaaacccgtgttcgttggcggtgtgaccgtcagcaatgccaccttgcacaat
atggacgaaatcgaacgcaaggatgtgcgtatcggtgactcggtgatcgtgcgcagggca
ggggacgtgattcccgaagtggccagtgtcatcctcgaacgccgcccggaaggtgctgta
ccgattgtgatgcctgtccattgcccggtgtgcggttcggaggtgaagcgctcggaaggt
gaagcagttgcgcgttgcacaggcggtttgtattgccccgcgcaagtcaaagaggcgatc
aaacacttcgcttcacgcaaagccctgaatatcgatggcttgggtgacaaaatggtggag
caactgtttgatgcaggtttgatccgtcatgtggatgacctctatagcctggatgttgca
gccgtggcaggtttggagcgcatgggcaagaagtctgccgaaaacctcattgccgcgctg
gaaagcagcaaatccaccacgctggaacgctttatttacgggctaggcatccgcaacgca
ggcgagggaacggctaaagggctttcgcgccatttcggttccttggaagcgatacaggct
gctagcgaagaaaccttgaagctggttcccgatattggtgtgattgttgcggcgaatgtc
gcccagttcttcagcgaagcccacaaccgcgacacgatccagcatttgcgggatttgggt
gtccattggcctgattacgaagctaaaccgccagaggctttacccttggctggcaagact
tacgtcattacgggcacgctcagccgttcccgcgatgacatcaaggccgatctggaagcg
ctgggggcgaaagtctccaacagtgtttcgaaaaagaccacggcgctgattgcgggggaa
agtgcgggctccaagctcgataaagctcaaagtttgggagtggatgtgctggatgaggcc
gctttgtcggtcttattgagccacttatga
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integrated database retrieval system
