Thiorhodovibrio litoralis: Thiosp_04230
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Entry
Thiosp_04230 CDS
T09560
Symbol
ligA_2
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tlr
Thiorhodovibrio litoralis
Pathway
tlr03030
DNA replication
tlr03410
Base excision repair
tlr03420
Nucleotide excision repair
tlr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tlr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Thiosp_04230 (ligA_2)
03410 Base excision repair
Thiosp_04230 (ligA_2)
03420 Nucleotide excision repair
Thiosp_04230 (ligA_2)
03430 Mismatch repair
Thiosp_04230 (ligA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tlr03032
]
Thiosp_04230 (ligA_2)
03400 DNA repair and recombination proteins [BR:
tlr03400
]
Thiosp_04230 (ligA_2)
Enzymes [BR:
tlr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Thiosp_04230 (ligA_2)
DNA replication proteins [BR:
tlr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Thiosp_04230 (ligA_2)
DNA repair and recombination proteins [BR:
tlr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Thiosp_04230 (ligA_2)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Thiosp_04230 (ligA_2)
MMR (mismatch excision repair)
DNA ligase
Thiosp_04230 (ligA_2)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Thiosp_04230 (ligA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
DNA_ligase_ZBD
BRCT
HHH
PTCB-BRCT
RNA_pol_A_CTD
Fur_reg_FbpA
Motif
Other DBs
NCBI-ProteinID:
WPL14387
LinkDB
All DBs
Position
4575561..4577606
Genome browser
AA seq
681 aa
AA seq
DB search
MSQPETNSAEVRAAELRELLEYHNHRYYVLDDPEIPDAEFDALLLDLQQIEHHHPELRTA
DSPTQRVGAPPAERFSPARHVVPMLSLGNGRNEDDLREFDQRIRRELGLEEIHYVAEPKL
DGLAISLSYQDGVLTRAATRGDGHTGEEVTAQVRTIGAVPLRLQGTGWPRLLEVRGEVYL
PLAGFEALKERMLANGQTPFKNPRNAAAGSLRQLDPKITASRPLTMFCYGFGAVEGGDLG
PTQSGALAKLRDWGLRVSPESTRVTGAEGCIQYQRAIGERRDTLDYEIDGVVFKVDDLSA
QQRLGFRARDPIWAIAYKYAAREEQTRVRAVEFQVGRTGAVTPVARLEPVDVAGVTVSNA
TLHNIDEVQRKDVRAGDSVIVRRAGDVIPEVVGVVESLRPPGTEPVTLPAHCPVCGSDVI
RAEGEAVARCSGGLYCAAQRKEALKHFAARRALDIDGLGDKLIEQLIERDMVKTPADLFT
LTLEQLADLPRMGEKSARNLLEALERARETTLARFIYALGIREVGETMAATLASHFGDFD
QLMQADQDSLVAIDGIGQTVASHIRGFFEQAHNREAIAALVSSDGAGIHWPAPPSLADAG
EQTLRGKTFVLTGTLNRPREQVKAELVALGAKVTSAVSASTDYVILGANPGSKQAKAAKL
GIPLLDETQLRLLLKDPGPPG
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgagccagccggagaccaactccgccgaggttcgcgctgccgagttgcgcgagctgctc
gagtatcacaatcatcgctattacgttctcgatgatccggaaattccggacgctgagttc
gatgcactgctgcttgatttgcagcaaatcgagcaccaccaccctgagcttcgcaccgct
gattctcccacgcagcgggtcggggcaccgcctgccgagcgcttcagtccggcgcggcat
gtggtccccatgctgtcgcttggcaacgggcgcaacgaggatgatctgcgcgagttcgac
cagcgcatccgccgcgaactgggcctggaagaaatccattatgtcgcagagcccaagctc
gacggcctggcgatcagcctaagttaccaggacggcgtactgacgcgtgcagcaacccgc
ggtgacggacacaccggcgaggaggtcaccgcccaggtgcgcaccattggcgccgtgccg
ctgcgcctgcagggtaccggttggccgcggctgcttgaggtccggggggaggtgtatctg
ccgctggccggattcgaggcgcttaaggaacgcatgctggctaacgggcaaacgccgttc
aagaatccccgcaacgccgccgccggcagcctgcgtcagctcgatcccaaaatcaccgcc
agccgcccactcaccatgttctgctatggctttggcgctgtcgagggcggcgacttgggg
ccgacccagagcggcgcgctggccaaactgcgcgactgggggctgcgggtctcgcccgag
tcgacccgcgtcaccggggctgaaggctgcatccagtatcagcgcgccattggcgagcgg
cgcgacacactcgactacgagatcgacggggtggtattcaaggtcgatgacctctcggcg
cagcagcgtctcggtttccgcgcgcgcgatccgatctgggcgatcgcctacaaatacgct
gcccgcgaggaacaaacccgcgtgcgcgcggtggagtttcaggtcgggcgcactggtgcg
gtgaccccggtcgcgcgtctcgagccagtcgatgtcgccggcgtgactgtttccaacgcc
accctgcacaatatcgacgaagtccaacgcaaggatgtccgcgccggagatagcgtgatt
gtgcgccgggccggggatgttatccctgaggtggtgggggtggtcgagtccctgcgcccg
cccggcaccgagccggtcaccctgcccgcgcattgcccggtgtgcggctcggatgtcatc
cgcgccgagggcgaggcggtcgcgcgttgcagcggcgggctctattgcgccgcccagcgc
aaggaagccctcaagcacttcgccgcgcgcagggcgctcgacatcgacggtctcggagac
aaactgatcgagcagctcattgagcgagacatggtcaaaaccccggccgatcttttcacc
ttgacgctggagcagttggcagatctgccgcgcatgggcgagaaatccgcccgcaacctg
ctcgaggccttggaacgcgcccgcgaaacgaccctcgcacgcttcatctacgccctcggc
attcgtgaagtcggcgaaaccatggcagccaccctggcgagccatttcggtgatttcgat
cagctgatgcaggctgaccaggacagcctggttgccatcgacggcatcggccagactgtc
gccagtcacatccgcggcttttttgagcaggcgcacaatcgcgaggcgatcgccgcgctt
gtctcatcggacggcgctggtatccactggcccgccccgccgagcctggctgatgccgga
gaacaaactctgcgcggcaagaccttcgtccttaccggcactctcaatcgcccacgcgag
caggttaaagccgagctggtcgccctcggcgccaaggtcaccagcgcggtttcagccagc
accgactatgtgatcctgggcgcgaacccgggcagcaagcaggccaaggccgcaaagctc
ggcatcccgctgctcgacgaaacccagctacgcctgctgcttaaagacccggggccacct
gggtag
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