Tessaracoccus lacteus: QH948_09340
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Entry
QH948_09340 CDS
T10309
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tls Tessaracoccus lacteus
Pathway
tls03030
DNA replication
tls03410
Base excision repair
tls03420
Nucleotide excision repair
tls03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tls00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QH948_09340 (ligA)
03410 Base excision repair
QH948_09340 (ligA)
03420 Nucleotide excision repair
QH948_09340 (ligA)
03430 Mismatch repair
QH948_09340 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tls03032
]
QH948_09340 (ligA)
03400 DNA repair and recombination proteins [BR:
tls03400
]
QH948_09340 (ligA)
Enzymes [BR:
tls01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QH948_09340 (ligA)
DNA replication proteins [BR:
tls03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QH948_09340 (ligA)
DNA repair and recombination proteins [BR:
tls03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QH948_09340 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QH948_09340 (ligA)
MMR (mismatch excision repair)
DNA ligase
QH948_09340 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QH948_09340 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
HHH
PTCB-BRCT
DUF7575
Motif
Other DBs
NCBI-ProteinID:
WGT46356
LinkDB
All DBs
Position
complement(2013884..2015983)
Genome browser
AA seq
699 aa
AA seq
DB search
MTDHTEAESGVTSPELRRAWTELNTRLTEAQEAYYGADQPTLSDADYDAAMRELEDLEAA
HPSLVTPDSVTQRVGQARITEFKPVEHRRRMLSLDNVFSAEELDGWLARTPASSYLVELK
IDGLAINLLYLGGRLAVAATRGDGRVGEDVTPNVATIAGIPHRLPAGAPSVLEVRGEVFF
PVAGFEKLNEDLVEAGRAPFANPRNAAAGSLRQKNPEVTASRPLRMLVHGIGAVEGAEFE
TQSGAYEALKGWGFPTAETCRVVGTGAEVQEFVAWHGEHRHDLSHEIDGIVVKVDDLAEQ
DRLGATSRAPRWAIAYKYPPEEVNTKLLDIQVNVGRTGRVTPFGVMEPVFVSGSTVEMAT
LHNAFEVERKGVLIGDTVVLRKAGDVIPEIVAPVVALRDGTERAFVMPTHCPSCGTELRP
EKEGDKDIRCPNARSCPSQLRERLFGLASRGALDIEALGWEGAAALLDGRLLADEGGLFT
LTAADLLTTDFYTRAAKPAELADEATPKRDGRVLAAAGEKLLTNLEAAKAQPLWRVLVAL
SIRHVGPTAARSLAARFGSVDAIREASLEQLASAEGVGGVIAESVKGWFDVDWHDAIVAA
WAEAGVRMADEVDESTPRTLEGLTVVVTGSLDGFTRDGAKEAIISRGGKAAGSVSKNTDY
VVIGANAGSKAAKAEQLGLPILDEAGFVRLLAEGPAGLE
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaccacaccgaggcagagtccggcgtcacgtcccccgagctgaggcgcgcctgg
accgagctgaacacccggctgaccgaggctcaggaggcctactacggggcggaccagccg
acgctctcggacgccgactacgacgccgcgatgcgggagttggaggatctggaggccgcg
cacccgtcgctggtcacgcccgactccgtcacgcagcgtgtggggcaggcgcggatcacg
gagttcaagcccgtggagcaccgcaggcggatgctgagcctcgacaacgtgttcagcgcc
gaggaactcgacggctggctggcccgcacgccggcgtcgtcgtatctggtcgagctgaag
atcgacgggctggccatcaacctgctgtacctgggcgggcgcctcgcggtggccgccacc
cgcggcgacgggcgcgtcggggaggacgtgacgcccaacgtcgcgaccatcgccggcatc
ccgcaccgcctgcccgcgggggcgccgtcggtgctggaggtgcgcggcgaggtgttcttc
cccgtcgccggcttcgagaagctgaacgaggacctggtcgaggcggggcgggcgccgttc
gcgaacccccgcaacgccgcggcggggtcgctgaggcagaagaaccccgaggtcaccgcg
tcgcggccgctgaggatgctcgtgcacggcatcggcgccgtggagggggcggagttcgag
acgcagtccggcgcctacgaggcgctgaagggctggggcttcccgaccgcggagacctgc
cgggtcgtcgggacgggggccgaggtgcaggagttcgtcgcctggcacggcgagcaccgc
cacgacctcagccacgagatcgacggcatcgtcgtgaaggtcgacgacctcgccgagcag
gaccgcctcggtgccacctcgcgggccccgcgctgggccattgcctacaagtacccgccg
gaggaggtcaacacgaagctcctcgacatccaggtcaacgtcggccgcaccggccgggtg
acgccgttcggcgtgatggagcccgtgttcgtcagcggctcgaccgtcgagatggccacg
ctgcacaacgcgttcgaggtggagcgcaagggcgtgctgatcggcgacaccgtcgtcctg
cggaaagctggcgacgtgatccccgagatcgtcgcccccgtcgtggccctgcgcgacggc
accgagcgggcgttcgtgatgccgacgcactgcccatcctgcgggacggagctccgcccc
gagaaggagggggacaaggacatccgctgcccgaacgccaggtcctgcccgagccagctg
cgtgagcggcttttcgggctcgcgtcccgcggcgccctcgacatcgaggcgctgggctgg
gaaggggccgcggcgctgctcgacgggaggctgctggccgacgagggcggcctgttcacc
ctgaccgccgccgacctgctgaccaccgacttctacacgcgtgccgccaagcccgccgag
ctggcagacgaggccacgccgaagcgcgacggccgagtgctcgccgcggcgggggagaag
ctgctgacaaacctggaggcggcgaaggcgcagccgctctggcgtgtgctggtcgcgctg
tccatccggcacgtcgggccgaccgcggcccgctcgctggccgcccgtttcgggtcggtc
gacgcgatccgggaggcctcgctcgagcagctcgcctcggccgagggcgtcggcggggtc
atcgccgaatcggtgaagggctggttcgacgtcgactggcacgacgcgatcgtcgcggcc
tgggccgaggccggtgtgcggatggccgacgaggtcgacgagtcgacgccacgcacgctc
gagggcctgaccgtcgtcgtcactgggtcgctcgacggcttcacccgcgacggcgcgaag
gaggcgatcatctcccgcggcggcaaggccgccgggtcggtgagcaagaacaccgactac
gtggtgatcggggccaacgcggggtccaaggcggcgaaggccgagcagctcggcctgccg
atcctcgacgaggccggcttcgtccggctgctggccgagggccccgcggggctggaatag
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