Thermosulfurimonas marina: FVE67_00545
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Entry
FVE67_00545 CDS
T06536
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tmai
Thermosulfurimonas marina
Pathway
tmai03030
DNA replication
tmai03410
Base excision repair
tmai03420
Nucleotide excision repair
tmai03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tmai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FVE67_00545 (ligA)
03410 Base excision repair
FVE67_00545 (ligA)
03420 Nucleotide excision repair
FVE67_00545 (ligA)
03430 Mismatch repair
FVE67_00545 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tmai03032
]
FVE67_00545 (ligA)
03400 DNA repair and recombination proteins [BR:
tmai03400
]
FVE67_00545 (ligA)
Enzymes [BR:
tmai01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FVE67_00545 (ligA)
DNA replication proteins [BR:
tmai03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FVE67_00545 (ligA)
DNA repair and recombination proteins [BR:
tmai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FVE67_00545 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FVE67_00545 (ligA)
MMR (mismatch excision repair)
DNA ligase
FVE67_00545 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FVE67_00545 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
HHH_3
UPF0758_N
BRCT_2
zf-NADH-PPase
Auto_anti-p27
HHH_8
DUF3701
OrfB_Zn_ribbon
ADK_lid
RlmA_N
Motif
Other DBs
NCBI-ProteinID:
QJA05367
UniProt:
A0A6H1WQ68
LinkDB
All DBs
Position
109212..111257
Genome browser
AA seq
681 aa
AA seq
DB search
MAEKREIPPEVIERVKKLREEIEYHNYRYYVLDSPVISDAEYDALMRELKELEAKYPELV
TPDSPTQRVGYPPAKEFRTVPHAIPMLSLDDAFSEEEVLDFDRRVKRFLNLPEDQDIEYT
VEPKMDGLAVELVYEDGKFTVGSTRGDGYQGEDVTNNLKTIKSIPLRLFSTDGLPIPRLL
EARGEVFMKKEDFKKLNEERLSRGEPPFANPRNAAAGSLRQLDPNVTAQRPLDIYFYGVG
RVEGYEFKTQWEILQTLPKWGLKVNPYVRLVKNIREAIAYHHEMEKIRESLPYEIDGIVI
KVNDLSLWEKLGTKARSPRYALAYKFPPTQVTTQVLDIIVQVGRTGAVTPVAILKPVQVG
GVIVSRATLHNEDEIRRKDVRIGDWVLVQRAGEVIPEIVMVIKERRTGNEKPFKMPEVCP
VCGTKLVRKPGEAVWRCPNRGCYGQLVRHILHFASRGAMDIEGLGTKVAEALVDRGLVQD
VGDLYYLKVEDLLQLPGFALKKARNLYEAIQRSKKTTLARFLYALGIRHVGEVAAQLLAK
HFKSLEAIKKASMADLLSVPGIGPEAARSVWEWFRNERNLKTLEKLLQAGITFEEEAEEA
PAEKPLEGKTFVFTGALKSMTREEAKRRVQALGGRVASSVSRNVDYVVVGENPGSKYDRA
RALGLKMINEEEFLKLIGQKP
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggccgaaaaacgagagatcccgccggaggtcatcgaaagggtcaaaaagcttcgggaa
gagatagaataccacaattatcgctactacgtactggattccccggtcatttcggatgcg
gaatatgatgccctcatgcgagagctcaaagaactggaagcgaaatatccggagctggtc
accccggactctcccacccagcgggtgggttatcctccggccaaagagttccgaacggtg
ccccacgccatccccatgctttccctggacgacgccttcagtgaggaagaggtcctggat
ttcgaccggcgggtgaaacgatttctcaatcttccggaagatcaggatatcgagtacacc
gtagagcctaaaatggacgggcttgcggtagagctggtctatgaggacggaaaattcacc
gtgggctccactcggggcgacggctaccagggagaggatgtgaccaacaacctcaagacc
atcaagagcatccccttgaggcttttttccaccgacgggctccccatcccgcggcttctc
gaggcccggggggaggtcttcatgaaaaaagaggactttaaaaagcttaacgaagaaagg
ctttcccggggagagcctcctttcgccaaccctcgcaacgcagccgcaggctccctgcgc
cagctcgaccccaatgtgacggctcagcgcccgctggacatttacttttacggcgtaggt
cgggtggagggttacgaattcaagacccagtgggagattctgcagacccttcctaaatgg
gggctcaaggtcaacccctatgtacggctggtcaaaaacattcgggaggccatcgcttat
caccacgagatggaaaagatccgggaaagccttccctatgagatcgacggtatcgtgatc
aaagtcaacgatctttccctctgggaaaagctggggaccaaggcccgcagcccccgctac
gccctggcctataagttcccccccactcaggtgaccacccaggtgctggatattattgtc
caggtagggcgtaccggggcggtaaccccggtggccatcctcaagcccgtgcaggtgggc
ggggtgatcgtctcccgggccaccctccataacgaggacgagatccggcgcaaggacgtg
cgtattggagactgggtcctggtgcagcgggccggcgaggtcattcccgagattgtcatg
gtcatcaaggaacgccggaccggaaacgaaaaacccttcaagatgccggaggtctgtccg
gtctgtggaaccaagctggtgcgcaagcctggagaggcggtctggcgctgccccaaccgg
ggctgttacggccagctcgtccgccatatcttacactttgccagccggggggccatggat
atcgaagggctgggcaccaaggtggccgaggccctggtggaccgcggtctggtccaggat
gtgggggatctctattatctcaaagtggaagacctcttgcagcttccgggctttgccctg
aaaaaggcccgcaacctttacgaggctattcagcgttctaaaaagaccaccttggcccgc
tttctctacgccctgggcatccggcatgtgggagaagtggccgcccaactcctggccaag
cacttcaagagcctggaggccatcaaaaaggcttctatggccgatcttctaagtgtcccg
gggatcggcccagaggcggctcgttcggtctgggagtggttccgcaacgagaggaatctc
aagaccctggaaaagctccttcaggctggaattaccttcgaagaggaggccgaagaggcc
ccggccgaaaaacccttggagggcaaaaccttcgtcttcaccggggccttgaagagtatg
acccgggaggaagccaaacggcgcgtgcaagccctgggaggccgggtagcctcttcggtt
tcccggaacgtggactatgtagtggtgggggagaacccgggctccaagtacgatcgagcc
cgagccctggggctcaagatgatcaacgaggaggaattcctgaagctgatcgggcagaag
ccttaa
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