Tenacibaculum maritimum: MARIT_1878
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Entry
MARIT_1878 CDS
T05240
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tmar
Tenacibaculum maritimum
Pathway
tmar03030
DNA replication
tmar03410
Base excision repair
tmar03420
Nucleotide excision repair
tmar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tmar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MARIT_1878 (ligA)
03410 Base excision repair
MARIT_1878 (ligA)
03420 Nucleotide excision repair
MARIT_1878 (ligA)
03430 Mismatch repair
MARIT_1878 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tmar03032
]
MARIT_1878 (ligA)
03400 DNA repair and recombination proteins [BR:
tmar03400
]
MARIT_1878 (ligA)
Enzymes [BR:
tmar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MARIT_1878 (ligA)
DNA replication proteins [BR:
tmar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MARIT_1878 (ligA)
DNA repair and recombination proteins [BR:
tmar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MARIT_1878 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MARIT_1878 (ligA)
MMR (mismatch excision repair)
DNA ligase
MARIT_1878 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MARIT_1878 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
BRCT_2
OAS1_C
DNA_ligase_A_M
Auto_anti-p27
AphA_like
5_3_exonuc
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
SFZ83058
UniProt:
A0A2H1EAJ3
LinkDB
All DBs
Position
complement(2011874..2013871)
Genome browser
AA seq
665 aa
AA seq
DB search
MAIKQKIEALREELRQHNHNYYVLDNATISDYEFDIKLKELEKLEEENPQFFDPNSPTQR
VGGGITKSFETVAHKNRMYSLDNSYSKEDLLDWEKRIRKILGEDNTAYTCELKYDGASIN
LTYEKGEFIKAVTRGDGFRGDDVTANIRTIKSIPLKPSGEFLGDFEMRGEIILPLDGFHK
MNEERISNGEEAYRNPRNTASGSLKLQDSAEVAKRPLDCLLYQVVTDERKYKTHFESLQK
ATQVGFKIPNTMVLAKSIEEVFEFVNYWDEKRHELPYETDGVVIKVNDLQQQEELGYTSK
SPRWAIAYKFKAEQVSTVLNEITYQVGRTGAITPVANLVPVELAGTIVKRASLHNADQIK
KLDIRINDTVFVEKGGEIIPKIIAVDLTKRAKESKETIYATNCPECNTKLVRTEGDAKHY
CPNEFGCAPQITGRIQHFISRKAMDIDGLGGETVDLLRKEGLIQSYADLYELKAMQIIPL
ERMAEKSAQNIIDGIEKSKEIPFEKVLFALGIRFVGETVAKKLVKHFKSMETLMKADFES
LVAVDEIGDRIAQSIIEFSADSRNRVLVDRLKSYGIQLEVSAKSLENQTDKLAGKVFVVS
GVFYQMTRNELKKSIEDNGGKVSSSISKKTTYVIAGDNMGPSKLTKAQNLGIEIISEQKF
IEMIR
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggcaattaagcaaaaaatagaggcactaagagaagaattacgtcaacataatcacaat
tattatgtgttagataatgcaaccatttctgattatgagtttgatataaaattaaaagaa
ttagaaaagttagaagaagagaatccgcaattttttgatccaaattcaccaacgcaacga
gtaggaggaggaataacaaaaagttttgagactgttgcacataagaatagaatgtattca
ttggataattcctattctaaagaagatttattagattgggaaaaacgtatccgtaaaata
ttgggagaagataatacagcatatacatgcgaattaaaatatgatggagcttctattaat
ttaacatatgaaaaaggagagtttatcaaggcagtaacaagaggagatggatttcgagga
gatgatgttacagctaatatccgtacgataaaatcaattccattgaaacccagtggtgaa
tttttgggggatttcgaaatgagaggagaaattattttacccttagacggatttcataaa
atgaatgaagagcgcatttcaaatggcgaagaagcgtatagaaatccgagaaatacggca
agtggaagtttaaaattgcaagatagcgctgaagttgctaaacgtcctttagattgtttg
ttataccaggttgttactgatgaacgtaagtacaaaacccattttgagagtttgcagaaa
gctacgcaagtagggtttaagatacctaatactatggtattagcaaagtcgatagaagaa
gtttttgaatttgtgaattattgggatgaaaaacgtcatgaattaccttatgaaacagat
ggagtagtgataaaagtaaacgatttacaacagcaagaagaattgggatatacttctaaa
tcgcctcgatgggcaattgcttataaatttaaagcagagcaggtatcaacggtattgaat
gaaataacctatcaggtaggaagaacaggagcaataactccagtagcaaacttagttcct
gtagaattggcaggaactattgtaaaaagagcatcgttacataatgcagatcaaataaag
aagttagatattcgtataaatgatactgtttttgtagaaaaaggaggagaaattattcct
aagattatcgctgttgatttaacaaaaagagccaaagagtctaaagaaacaatatacgca
accaactgccccgagtgtaatacaaaattagtgagaacagaaggagacgcgaaacattac
tgtcctaatgaatttggctgtgcacctcaaataacaggaagaatacagcattttattagc
agaaaagcaatggatattgatggtttaggaggagaaactgttgatttattaagaaaggaa
ggattgattcaaagttatgcagatttatatgagttgaaagctatgcaaataataccctta
gagcgaatggcagaaaaatcggctcaaaatataattgatggcattgaaaagtcaaaggaa
ataccatttgaaaaggtattatttgcactaggaattcggtttgtaggagaaactgtagct
aaaaaattagtaaaacattttaaatcgatggaaacattaatgaaagctgattttgagagc
ttggtagcagtagatgaaataggagaccgaatagcgcaaagtattattgagttttcagca
gattcaagaaatagggttcttgtcgatcggttgaaatcttatgggattcagctagaggta
tccgcgaaaagtttagaaaaccaaacagataagttggcagggaaagtatttgtggtttca
ggtgttttttatcagatgacaagaaatgagttgaaaaagtcaattgaagataatggaggg
aaagtaagtagttctatttctaaaaaaacaacctatgttattgctggagataatatgggg
ccaagtaaattgactaaagcacaaaatttaggaattgaaataatttcagaacaaaaattt
atagaaatgattcgttaa
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