Thalassovita mediterranea: KUV46_02080
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Entry
KUV46_02080 CDS
T07443
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tmd
Thalassovita mediterranea
Pathway
tmd03030
DNA replication
tmd03410
Base excision repair
tmd03420
Nucleotide excision repair
tmd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tmd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KUV46_02080 (ligA)
03410 Base excision repair
KUV46_02080 (ligA)
03420 Nucleotide excision repair
KUV46_02080 (ligA)
03430 Mismatch repair
KUV46_02080 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tmd03032
]
KUV46_02080 (ligA)
03400 DNA repair and recombination proteins [BR:
tmd03400
]
KUV46_02080 (ligA)
Enzymes [BR:
tmd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KUV46_02080 (ligA)
DNA replication proteins [BR:
tmd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KUV46_02080 (ligA)
DNA repair and recombination proteins [BR:
tmd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KUV46_02080 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KUV46_02080 (ligA)
MMR (mismatch excision repair)
DNA ligase
KUV46_02080 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KUV46_02080 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
DNA_ligase_ZBD
HHH_2
PTCB-BRCT
MutL
DUF7340
Bep_C_terminal
DUF4420
Motif
Other DBs
NCBI-ProteinID:
QYJ01193
LinkDB
All DBs
Position
complement(425039..427141)
Genome browser
AA seq
700 aa
AA seq
DB search
MSSQKPAGDLTDAEAKRELARLAIEIKLADAAYYKEDDPHLSDAEYDALRQRNSDVEAAF
PHLKRKDSPSDRVGAEVSEAFSKVEHGVPMLSLDNAFSDEDVEEFVGRIRRFLGLDADEA
LTITAEPKIDGLSLNLTYQDGELVRAATRGNGQVGEDVTANARTIDDIPAKLAGSGWPSR
IEIRGEVYMEGEAFKALNASQEDAGKKVFANPRNAAAGSLRQLDVAITRSRPLRFFAYAW
GEASEKFADTQTGAVAMLQDWGFITNELFKPYQDVKGLLGAYANMAERRAMLGYDIDGVV
YKVDRLDWQERLGFVSRFPRWAIAHKFPAERAVTKLEAIEIQVGRTGTLTPVARLTPVTV
GGVVVSNATLHNEDEIARLDVRPGDMVEIQRAGDVIPQVLGVVDAGEDRAPPYKFPETCP
ECGSAAVREIDDKGEEDVRRRCTGGLTCPAQAVERLKHFVSRKALDIDGLGAKQVELFYS
KGAVKGPQDIFRLARRLEEEGLPPLKDWEGFGDTSARNLFDAIDARRKPPFQRFLNGLGI
RHVGEITSGLLARHYLDWESFWQVVEKAAAGDTSAEADLLSIDGIGQTAITSLKDFAAES
HNQDMLASLLAEIEIEPAEAAASDSAVSGKTIVFTGTLEKMTRDEAKSRATALGAKVSGS
VSGKTDILVAGPGAGSKLKKAEELGVRVITEDDWLELAGL
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgagttcgcagaaaccggctggagacctgactgatgcagaagcaaagcgcgagcttgcc
cgcctcgcgatcgagataaagctcgcagatgcggcctattacaaggaagacgacccgcat
ctgagcgatgcggaatacgacgctcttcgccagcgcaatagcgacgtcgaagctgccttc
ccgcatctgaaacgcaaggacagcccgagcgaccgggtcggtgccgaagtctccgaagcc
ttcagcaaggtcgagcacggtgtccccatgctctcgctcgacaatgcgttttctgatgag
gacgtcgaggagttcgttggccgtatccgccgcttcctgggtctggatgccgatgaagcc
ctcaccatcacggctgagcccaagatcgatggcctgtcgctgaaccttacctatcaggat
ggcgagcttgttcgcgcggcgacgcgcggtaacgggcaggttggcgaggacgtcaccgcc
aatgcgcgtaccattgatgatatcccggcgaagctagcggggtcaggctggccatcccgg
atcgagatccgcggtgaggtctatatggagggtgaggccttcaaggcactcaacgcttcc
caggaggacgcgggcaagaaggttttcgccaatccgcgtaatgccgccgcaggtagcctc
cgccagctcgacgtcgccatcacccgttcgcgtcccttgcgcttctttgcctatgcttgg
ggtgaggcgtccgaaaagttcgcagacacccagactggcgctgtcgctatgctgcaggat
tggggcttcatcaccaatgagctcttcaaaccctatcaggacgtcaaaggcctgctcggc
gcctatgcgaacatggcagagcgccgcgccatgctcggctatgacattgatggcgtcgtc
tacaaggtcgaccggctcgactggcaggagaggctcggcttcgtttcgcgcttcccccgc
tgggccattgcccacaaatttccggcagaacgggcggtcaccaaacttgaagcgatcgaa
attcaggtcggccgcacaggtacgctgaccccagttgcgcgcctgacgcctgtcacggtt
ggcggcgtcgtggtctccaatgccaccctgcacaatgaggacgagatcgcccgtcttgat
gtgcgccccggcgacatggtcgagattcagagggcgggggatgtcatcccgcaagtcctc
ggcgtggtcgacgccggcgaagaccgggcgccgccctacaagtttcccgagacctgcccc
gaatgtggatcagctgccgtccgcgagatcgacgacaagggcgaggaagacgttcgccgc
cgctgcacgggtggcctcacttgcccggcgcaggcggtcgagcggctaaagcattttgtc
tcccgcaaggcgctcgacatcgatggtcttggcgcaaagcaggtcgaactcttctattcg
aaaggggccgtaaaaggcccgcaggacattttccgtctcgcccgtcggctcgaggaagaa
ggcctgccaccgctcaaggattgggaaggctttggcgacacgtctgcccgcaacctgttc
gatgccatcgatgcgcgccgcaagccgccattccagcgtttcctgaatggccttggcatc
cgccatgttggcgagatcacgtccggcctgctcgcgcgccactatctcgactgggaaagc
ttctggcaggtcgtcgagaaagctgccgctggtgacacctcggctgaggcagaccttctc
tccatcgacggcataggccagaccgcgatcaccagcctcaaggacttcgccgcagagagc
cacaatcaggacatgctggcgagcctgcttgcagaaatcgagatcgaaccggcagaagcc
gcggccagcgacagtgccgtttccggcaaaaccattgtcttcaccgggacgctcgagaaa
atgacccgcgacgaagcgaaatcgcgggcgaccgcacttggcgcaaaagtgtccgggtcg
gtatccggcaagaccgatattctcgtcgccgggccgggcgcgggctcgaaattgaaaaag
gccgaagagctcggtgtccgcgtcatcacagaggatgactggctcgagctcgccggcctt
taa
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