Thermosipho melanesiensis: Tmel_1511
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Entry
Tmel_1511 CDS
T00550
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tme
Thermosipho melanesiensis
Pathway
tme03030
DNA replication
tme03410
Base excision repair
tme03420
Nucleotide excision repair
tme03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Tmel_1511
03410 Base excision repair
Tmel_1511
03420 Nucleotide excision repair
Tmel_1511
03430 Mismatch repair
Tmel_1511
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tme03032
]
Tmel_1511
03400 DNA repair and recombination proteins [BR:
tme03400
]
Tmel_1511
Enzymes [BR:
tme01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Tmel_1511
DNA replication proteins [BR:
tme03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Tmel_1511
DNA repair and recombination proteins [BR:
tme03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Tmel_1511
NER (nucleotide excision repair)
GGR (global genome repair) factors
Tmel_1511
MMR (mismatch excision repair)
DNA ligase
Tmel_1511
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Tmel_1511
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
DNA_ligase_ZBD
HHH
RNA_pol_A_CTD
HHH_3
RNA_ligase
PADR1_N
PDH_C
HAS-barrel
5_3_exonuc
SHOCT
Motif
Other DBs
NCBI-ProteinID:
ABR31356
UniProt:
A6LN55
LinkDB
All DBs
Position
complement(1496741..1498729)
Genome browser
AA seq
662 aa
AA seq
DB search
MKNIKEEIERLRKEIEYHNYRYYVLADPIISDEEYDRLLKKLIELEKKYPKFSSPNSPTQ
KVGGGVISGFEKVEHTTPMLSLDNTYNETEIKEFDNRIKRLLNRNSVEYVCELKIDGISV
SIRYENGEFRQAISRGNGIIGDDITENVKKIKSIPLRLFKKYTIEVRGEIFMPIKEFEKY
NKIAEEEGLQPFANPRNAAAGTIRQLDSSIVAKRNLDSFIYYIVNPENYSLKTQWEALDF
LKKLGFKVNRQSILCKNVECIIDFWKKMTKERKNLDYWIDGLVIKVNNFEFQKILGETSK
SPRWAIAFKFPAIKKKTKIIDVELNVGRSGIITPVAIFEPIDLDGTIVKRASLHNFEYIQ
DKDIRIGDYVYIEKAGGIIPQVVSVVKEKRTGLEKEIKIPKSCPVCNGPVGKLTEDEIAI
RCLNPHCPQKLKRHLEIFVSKSAFDISGIGEKIIDKIVDAKLIKDIADIFYLTPFDLAQI
SGLGQKSIAKILEQIEKSKKTPLNRVIVGLGIPMVGEKTSKILAEKFKNIEKLSSATYDE
LIKIENIGPEIAKSIVTYFQNEKTKEIINKLKKAGVNLEEKDVKKSDKLKGLTFAITGKL
KSYTREEIKKIIEENGGKVSNSVSSKTNFLIAGEEPGSKLEKAKRLNIKIISEEDFLKLI
SG
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacataaaagaggaaattgaaagattacgaaaagaaatagaataccacaactac
cgatattatgttctagcagatccaataataagtgatgaagaatatgacagattattaaaa
aaactaatagaattagaaaaaaaatacccgaaattttcttctccaaattccccaacgcaa
aaggttggaggaggagttatttcaggatttgaaaaagttgagcatacaactccaatgtta
agtcttgataatacatacaacgaaacagaaataaaagaatttgacaatagaataaaaagg
ctattaaacagaaattctgttgaatatgtttgtgaattaaaaatcgatggtatctccgta
tcaataagatatgaaaatggtgaatttcgccaagcaattagtagagggaacggtataata
ggtgatgatattacagaaaatgttaaaaaaattaaatcaattcctctaagattatttaaa
aaatacacaatagaagttagaggagaaatttttatgcccattaaagaattcgaaaaatac
aataaaattgccgaagaagaaggattgcaaccatttgccaacccaagaaatgctgctgct
ggaactattaggcaactggattcctctatagttgcaaaaagaaatctagattcatttata
tattacatagtaaatccagaaaattacagtttaaaaacacaatgggaggctctggatttt
ttaaaaaaactaggatttaaagtcaatagacaatcaatattatgtaaaaatgttgaatgt
attatagacttttggaaaaaaatgactaaagagagaaaaaatcttgattattggattgat
ggacttgtaatcaaagtaaataattttgagtttcaaaaaattttaggtgaaacatcaaaa
tcaccaagatgggcaattgcatttaaatttccagcaataaagaaaaaaactaagataata
gatgtagaacttaacgtaggaagaagtggaataataaccccagttgcaattttcgaaccc
atagatcttgatggaacaattgtaaaacgtgcatctttacataattttgaatatatccag
gacaaagatataagaataggcgattatgtttatatagaaaaagcaggtggaataattcca
caagttgtaagtgtagtaaaagaaaaaagaacaggtttagaaaaagaaataaaaattcct
aaaagttgtcctgtatgtaatggaccagttggcaaactaactgaagacgaaatcgctata
agatgtcttaaccctcattgtcctcagaaactaaaaagacatttagaaatattcgtctca
aaatctgcattcgacatttcaggaataggcgaaaaaataatagataaaatagtcgatgca
aagttgataaaagatatagcggacattttttacctaacaccttttgatttggctcaaata
agtggtttgggtcagaaatcaattgcaaaaattttagaacaaatagaaaaatcgaaaaaa
acaccgctaaatagggttatagttggactaggtattccgatggttggagaaaaaacctca
aaaattcttgcagaaaaattcaaaaatattgaaaaattgtcctctgcaacgtatgatgaa
ttaataaagattgaaaatatcggccctgaaattgccaaaagtatagtaacttatttccaa
aacgaaaaaacaaaggaaatcattaataaactcaaaaaagctggtgtaaatcttgaagaa
aaagatgtaaaaaagtccgacaaacttaaagggttaacattcgcaattacaggaaaacta
aaatcatacacaagagaagaaattaaaaaaataatagaagaaaatggaggaaaagtttca
aattcagttagttcaaaaacaaactttttaattgcaggagaagagcctggttcaaaactt
gaaaaagccaaaagattaaatataaaaataatctcagaagaagactttttaaaactcatc
agtggctaa
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