Treponema medium: DWB79_06655
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Entry
DWB79_06655 CDS
T07695
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tmed
Treponema medium
Pathway
tmed03030
DNA replication
tmed03410
Base excision repair
tmed03420
Nucleotide excision repair
tmed03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tmed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DWB79_06655 (ligA)
03410 Base excision repair
DWB79_06655 (ligA)
03420 Nucleotide excision repair
DWB79_06655 (ligA)
03430 Mismatch repair
DWB79_06655 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tmed03032
]
DWB79_06655 (ligA)
03400 DNA repair and recombination proteins [BR:
tmed03400
]
DWB79_06655 (ligA)
Enzymes [BR:
tmed01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DWB79_06655 (ligA)
DNA replication proteins [BR:
tmed03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DWB79_06655 (ligA)
DNA repair and recombination proteins [BR:
tmed03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DWB79_06655 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DWB79_06655 (ligA)
MMR (mismatch excision repair)
DNA ligase
DWB79_06655 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DWB79_06655 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_5
HHH_2
PTCB-BRCT
RNA_pol_A_CTD
DNA_pol_lambd_f
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QSH97428
UniProt:
A0A898DCR0
LinkDB
All DBs
Position
1481845..1483770
Genome browser
AA seq
641 aa
AA seq
DB search
MEKNARIQELEALIKKHQDLYYNAEPEISDADFDLLWDELRSLDPRNTLFATVPKDSADG
FPKAEHIIPMGSQDKAADPESFQKWAEKMPFSDFLVQYKLDGASMELQYEKGRLVRAVTR
GDGKIGDDITANVKKMQGVVLELKGDSAPTGTAPFSGGIRGEVLMTKEVLRRFYPDKKNC
RNAANGLMKRKDGSGSEHLEIICYDAAAGTVGKPFTETAPFTTETEKLNWLEAQGFLQVP
VTRCVGVREVIDYRAHVMDIRSTIPYDIDGLVVKNDHIDTADLSRARPEKQIAFKFSLEE
AVTVLRSVEWSESGVTYTPIALIDPVQLAGTTVKRANLCNPNMIAELNLKIGSRVLVTKR
GEIIPKIEALIENPASSVSIEQPCRCTSCGAALLDEGTRLYCPNPACPKLIHHRIEKWIN
TLDIQDFGTVLLKQLFDAQRLRSISDLYTLTVEELAALERMGKKSAEKVYRALHAKREIS
LPTFIAGFDIEGIGRTMVEKLVEAGFDTLEKLLAATEEDFAAVYQFGSILAHTLTLGLRD
AKEEMLHLTGSGTIVIQAPAAAQGKLPLAGKSFCFTGELNTLKRKEAEAMVQAKGGTVKS
SVTKGLTYLVTNTPDSGSSKNKKAQELGTEIITEEEFLKLF
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagaatgcacggatacaagagcttgaagcgctgataaaaaagcatcaggactta
tactataacgcggaaccggaaatttctgatgcggattttgatttattgtgggatgagctg
cgcagcctcgaccctcggaatacattatttgcaacggtacctaaggacagcgccgacggc
ttcccgaaagcggaacacattatcccgatggggagccaagacaaggcggcggatcccgaa
agttttcaaaaatgggcggaaaagatgccgttctccgattttctggtacaatacaaactg
gacggcgccagtatggagctgcaatacgaaaagggacggctcgttcgggcagtaacacgg
ggcgacggcaaaatcggtgacgatattaccgcgaatgttaaaaagatgcagggagtcgta
cttgaactgaaaggtgattccgcccccaccggcacagctcccttttccggcggtatccgc
ggcgaagtgttgatgaccaaagaggtgctgcgccgtttttatcccgataaaaagaattgc
cggaatgcggcaaacgggttgatgaagcgaaaggacggcagcggcagcgagcacctcgaa
attatttgctacgatgccgccgcgggaacagtcggaaagccttttaccgaaacggcgcct
ttcaccacggaaacggaaaaactcaactggcttgaagcgcagggctttttacaggtaccg
gttacgcggtgcgtcggcgtccgggaagttatcgactaccgcgcccatgttatggatatc
cgcagcactattccctacgacatcgacggtcttgtcgttaaaaacgatcatattgatacc
gcagacctcagcagggcgcgaccggaaaaacaaattgcttttaagttcagtcttgaagaa
gcggttaccgtactgcgcagcgtcgagtggagcgagtccggtgttacctacacccccatt
gcactcatcgatccggtacagctggcgggcacaaccgttaagcgggcaaacctctgcaac
ccgaacatgattgcggaactgaacttaaagatcggcagccgtgtgttggtaaccaaacgg
ggggagattatccccaagatagaagcgcttatcgaaaaccctgcatcaagcgtgtccatc
gaacagccttgccggtgtacgagctgcggcgctgcgctccttgatgaaggtacgcgcctg
tactgtcccaatcctgcgtgtcccaagcttattcatcaccggatagaaaaatggatcaac
accctcgatattcaagacttcgggacggtgctcctcaaacagctctttgacgcgcagcgt
ctccgctctatttccgacctttatacgctgaccgttgaagaactcgcagccctcgaacgc
atggggaaaaagtcggcggaaaaagtgtaccgcgcactgcacgccaagcgcgaaatctcc
ctgccgacctttattgccggttttgatatcgaaggcatcggccgcaccatggttgaaaaa
ctggttgaggctggctttgatactctcgaaaaactactcgctgccacggaggaagatttt
gccgctgtgtatcaattcggcagcattcttgctcatacgcttacgctcggtctccgcgat
gcaaaggaagaaatgttgcaccttaccggttcagggactatcgttattcaagcgccagcc
gccgctcaaggaaagcttccgctcgcaggaaaaagcttctgctttaccggagaactgaat
acgcttaaacgaaaagaagcggaagcgatggtgcaagcaaagggcggaacagtaaaatca
tcggtaacaaaggggcttacctatttggtaaccaatacccccgattccggttcgtcaaaa
aacaagaaagcgcaggaactcggcactgagattatcaccgaagaggaatttttgaaactg
ttctaa
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