Thiomicrospira microaerophila: JX580_06410
Help
Entry
JX580_06410 CDS
T08259
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tmh
Thiomicrospira microaerophila
Pathway
tmh03030
DNA replication
tmh03410
Base excision repair
tmh03420
Nucleotide excision repair
tmh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tmh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JX580_06410 (ligA)
03410 Base excision repair
JX580_06410 (ligA)
03420 Nucleotide excision repair
JX580_06410 (ligA)
03430 Mismatch repair
JX580_06410 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tmh03032
]
JX580_06410 (ligA)
03400 DNA repair and recombination proteins [BR:
tmh03400
]
JX580_06410 (ligA)
Enzymes [BR:
tmh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JX580_06410 (ligA)
DNA replication proteins [BR:
tmh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JX580_06410 (ligA)
DNA repair and recombination proteins [BR:
tmh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JX580_06410 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JX580_06410 (ligA)
MMR (mismatch excision repair)
DNA ligase
JX580_06410 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JX580_06410 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
HHH
PTCB-BRCT
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
UQB41332
LinkDB
All DBs
Position
complement(1306135..1308162)
Genome browser
AA seq
675 aa
AA seq
DB search
MIPIAEQVAQLREQLESHNYAYYVLDEPSISDAQYDALYRQLIALETEHPELITTESPTQ
RVGGKVKSGFQEVRHTVPMLSLDNAFSDEELAEFNQRVAARLSKQIPLVYAAEPKMDGLA
VNLRYQQGRLVQAATRGDGELGEDVTHNVRTIRAIPLKLCGSGWPDVLEVRGEVFMHKAA
LDKINQAQLERGDRPFANPRNAAAGSLRQLDPTITAQRPLSFFCYGWGQVSDDFKLPACY
SEMLDLLKTWGLPINPLASLVEDQAGLVNYYQDLFALRATLPYEIDGIVYKLDRLEGQQA
LGFTSKFPRWAIARKFPAQEVWTKLLAIDVQVGRTGALTPVARLEPVLVGGVMVSNATLH
NMDEIKRRDVRIGDTVIVRRAGDVIPEVVAPVLSQRPENTALFEMPVACPECGSDVVKEL
DKAVYCCTGGLFCPAQRKRALAHFVSRKAMDIQGLGEKLIDQLVSAGLVAHPDDFYKLNS
DELLQLERMASKSAQKVIDAIDASKSTTLPRFIYALGIPEVGEVTAKNLAQHFKTLDALM
QASLKQLLSVADVGEIVAHHLIQFFAQAHNLEVIEGLLSAGVSWPLIETPISSLDSVFSG
KTCVLTGSLQQMTREQAKAELENLGAKVSSAISAKTDYLIAGEKAGSKLAKAEVLGVNVL
TEAEFIELLGEQLDG
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgatccctattgccgagcaggttgcgcaacttcgtgaacaactggagtcgcataactac
gcttactatgttctagacgaacccagtatttctgatgctcagtatgatgcattgtatcga
cagcttattgcgctcgaaactgaacatcctgagcttatcacaaccgaatcaccaacccaa
cgcgttggcggcaaagtaaagtccggttttcaggaggtgcgccatactgttccgatgcta
tcgctggataatgcatttagtgatgaagaattagctgagtttaatcagcgtgtggctgct
cgcttgtctaagcagattccgcttgtttatgctgctgagcccaaaatggatggcttagcg
gttaatttgcggtatcagcagggacgattggttcaggcggcaacccgaggcgatggtgag
ttaggcgaggacgtaacgcataacgtgcgaaccattcgtgctattccgcttaaactttgt
ggctcaggctggcctgacgtcttggaggtgcgtggtgaagtgtttatgcataaagccgca
ctcgataaaattaaccaggcgcagttagaaagaggggatagaccttttgctaatccacga
aatgctgctgcaggcagtttgcgtcagttagatccgacgattactgctcagcgaccttta
agctttttttgttacggctggggtcaagtcagtgatgattttaaactgcctgcttgctat
agcgaaatgttagacttgctaaaaacctggggcttgccaattaatcctttggctagtctg
gtggaggatcaagcaggcctggtgaactactatcaggatttatttgctttacgtgctacg
cttccctatgagattgatggcattgtttataagctagatcggcttgagggtcagcaggct
ttaggttttacatcaaagtttccacgttgggcgattgcacgtaagtttccggctcaggag
gtttggaccaaattgttagcgattgatgtccaagtcggacgaaccggcgcattaaccccg
gtcgcgcgtttagagccggtgttagtcggtggtgttatggtatctaatgccaccttacat
aatatggatgaaatcaagcgcagggatgtgcgtattggtgacacggtgattgttcggcgc
gctggtgatgtgattcctgaagtggtggcaccggttttgagtcagcgacccgaaaatacc
gctttgtttgaaatgccggttgcttgtcctgaatgtggctccgatgtggttaaagaacta
gataaggcggtctattgttgcactggtggtttattttgccctgcacagcgtaagcgcgcc
ttagcccattttgtttcgcgtaaagcgatggatattcagggcttgggtgaaaagttgatt
gatcagctggtttcagcaggcctggttgcccaccctgatgatttttataaactcaatagt
gatgaattgcttcagttagagcgtatggcaagcaagtcggcgcaaaaggtgattgatgcg
attgatgcttcaaagtcaacgacgttaccgcgttttatttatgccttaggcatccctgaa
gtcggtgaggtgacagccaaaaatctggcacagcattttaaaacactcgatgccctcatg
caggcaagcctaaaacaactgctgtctgtagcggatgtgggggagattgtagcgcatcat
ttgatacagttttttgcccaagcccataaccttgaggtgattgagggcttattgtctgcc
ggggtaagttggccattgattgaaacaccgatcagttcgttggattcggtattcagtgga
aaaacctgtgttttgacaggaagtttacagcagatgacacgcgagcaggctaaagctgaa
cttgaaaacttaggcgctaaggtgtcgagcgcgatttctgctaagacggattatctgatt
gccggtgaaaaagccggctcaaagttggccaaagccgaggttttgggggtcaatgttttg
accgaagcggaatttattgaattactaggagagcagctggatggttag
DBGET
integrated database retrieval system
