Thiomicrospira microaerophila: JX580_08945
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Entry
JX580_08945 CDS
T08259
Name
(GenBank) efflux RND transporter permease subunit
KO
K18138
multidrug efflux pump
Organism
tmh
Thiomicrospira microaerophila
Pathway
tmh01501
beta-Lactam resistance
tmh01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
tmh00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
JX580_08945
01503 Cationic antimicrobial peptide (CAMP) resistance
JX580_08945
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
tmh02000
]
JX580_08945
01504 Antimicrobial resistance genes [BR:
tmh01504
]
JX580_08945
Transporters [BR:
tmh02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
JX580_08945
Antimicrobial resistance genes [BR:
tmh01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
JX580_08945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ACR_tran
MMPL
SecD_SecF_C
VHL_C
DUF7394
Motif
Other DBs
NCBI-ProteinID:
UQB41790
LinkDB
All DBs
Position
complement(1841883..1845011)
Genome browser
AA seq
1042 aa
AA seq
DB search
MIISDTAVKRPVLAAVLALLLVAFGLVAFEKLPLREYPNIDPPVVSITTGYPGASAAVIE
SRITKIIEDRIAGVEGIQFIQSVSMDGRSRITIEFDVNRDIDAAANDVRDRVARVSRQLP
DGADMPEVQKVDGDEDVIIWFNLTSDNMTVPQLTDYAKRYLIDRFSVLDGVARVRIGGGQ
EYAMRLWLDADAMAARGIAVSDIENALQTSNVELPAGTLTLREMSFSVRVDRQLLTPENF
ERLVIKRGAGDNLVRLADIARIEKGSIENRTFFRGNGLPMVGMGVIKQSTANTLSVARVV
KEEVERINAILPEGMAIKPSYDSSVFIESAIGEVYKTLGIAIILVMLVILAFLRSVRVAI
IPLVTVPVSMIATFWVLWMLGFSVNILTLLALVLAIGLVVDDAIVVLENVQRHIEKGYSP
LAAAFLGTRQVGFAVVATTLVLVAVFVPISFLEGTLGRLFSEFAITLAVAVIFSSLVALT
LSPALASKLLRAKKSNQPLLTEQDASPDTIPERPNIWIRAYRPALTLALRFPWLIALVFA
ATLYGSYQLIQQLPEEYAPREDRGAFFVMVTGPEGATHEYMKTYLEEVEARLMPLVEAGE
VHRLLVRSPRSFGNTDIFNTGIAIVILNDWSERRPASEIMQDVRTRLADLPGIRANPVMR
QGIGGRVQKPVQFVIGGGTYQELAQWRDILLEQLQQNNPGFEGIDSDYRETKPQLRVNID
YEQAADLGVTTLEIGRTLQTLLGSRTITTFVDQGEEYDIILEASREIYRTPQSMNTIYVR
SATTGQLVPLSSLVTIEEFADSATLNRYNRMRAITIEANLAEGYTLGEGLAHLERLAREH
LPADAMIDYKGQSRDFQTSGNAIYFVLMLGLVVVFLVLAAQFESFVSPFIIMFTVPLAVA
GGLLGLWYHGLTLNLYTQIGLVMLVGLATKNGILIVEFANQLRDKGQAFKEALVEASCLR
LRPILMTAITTVVGAIPLVMSSGAGAETRYVIGVVLIWGVTIATFFTLFVIPVVYQWLGR
FSQPAGHNKRQLEQELGDLHKL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atgatcatttcggacacggcggttaagcgcccggttttagccgcggttttggcgttattg
ctggtggcgtttggtttggtggcgtttgaaaagttgccgctgcgcgaatacccgaatatt
gacccgccagtggtgtcgattactacaggttatcccggcgcgtcagccgcggtaattgag
tcacgcattaccaaaattatcgaagatcgaattgccggtgttgaagggattcaatttatt
cagtcggtgtcgatggatgggcgttcacggattacgattgagtttgatgtgaatcgtgat
attgatgccgcggcgaatgacgtacgcgatagagtggcgcgggtctcacgtcaattaccg
gatggcgcggatatgcctgaagtgcaaaaggtggatggcgatgaggacgtgattatttgg
tttaacctgacttccgataacatgacggtgccgcaactcaccgattacgctaaacgttat
ttaattgatcgcttttcggtattagacggtgtggcgcgcgtgcggattggcggtggacaa
gaatatgccatgcgtctgtggttggatgcggatgcgatggccgcacgcggtattgcggta
tctgatattgaaaatgcgttacaaacctcgaatgtcgagcttccggcgggtaccttgacg
ttacgggagatgtcgtttagcgtgcgggttgatcgccagcttttgacaccggagaatttt
gagcggctggtgattaagcgcggtgcaggcgataacttagttcgcttggcggatattgca
cggattgaaaaaggttcgattgaaaatcgcacctttttccgtggcaatggcttgccgatg
gtggggatgggcgtcatcaagcaatcgaccgcgaatacgctcagtgtcgctagggtggta
aaagaggaagttgaacggattaacgccattttgccggagggcatggcgattaagccaagt
tacgacagttcggtatttattgaaagcgcgataggcgaggtgtacaaaacgcttggtatt
gcgattattttggtgatgttggtgattctggcgtttttacgctcagttagggtggcgatt
attccgctggtcacggtgccggtgtcgatgattgcgactttctgggtattatggatgctg
ggtttttctgtcaatattttgacgcttttggctttggtattggcgataggtctggtagtt
gatgatgcgattgtggtgctggaaaacgtccagcgccatatcgaaaaaggctactcccct
ttggcggccgcatttttggggacgcgccaagtcggtttcgcggtggtggcaaccaccttg
gttttggtcgcggtgtttgtgccaataagctttttggaaggcacgcttgggcgtttgttt
agtgagtttgcgattaccttggcagtagcggttattttttcgagtttagttgcgctgacc
ctatcacctgcgttggcgtctaagttacttagagccaaaaaatccaaccaacccctgtta
accgaacaggatgccagtccagacactatcccggaaaggccgaatatttggattcgtgcc
tatcgacctgccctcacgttggcgttgcgtttcccttggctgattgctttggtgtttgca
gcgacactctatggttcttatcagctgattcagcaactacctgaagagtatgcgccacgc
gaggatcgcggtgcgtttttcgtaatggtaactgggcctgaaggcgcgacccatgaatat
atgaaaacctatttggaggaggttgaggcgcgtttaatgccattagtggaggcaggtgag
gtgcatcgcttactggtaagaagtccacgctcattcggtaataccgatatttttaatacc
ggcattgcgattgtgattttgaatgactggagtgaacgccgcccagcaagcgaaatcatg
caggatgtgcgaacacgcttggccgacttgcctggaattagagcgaatccggtaatgcgc
caaggcatcggcggacgcgtgcaaaaaccggtgcaatttgtcattggcggtggaacctat
caggagttagcgcagtggcgcgatattttgttagagcagttacaacagaataatccggga
tttgaaggtattgattccgactatcgtgaaaccaagccgcaattacgggtgaatattgat
tatgaacaggcggcagacctaggcgtgaccaccttagaaattggccgtaccttacaaacc
ttactgggttcaagaaccatcaccacctttgttgaccagggcgaggagtacgatattatt
ctggaggccagtcgcgagatttatcgcacaccgcaaagcatgaataccatctatgtcaga
tcagccaccaccggacaattggtgcctttatcgagtttggtgacgatagaagagtttgcg
gattccgccaccctcaaccgctataaccgaatgcgtgcgattaccattgaagccaaccta
gctgaaggctataccctaggtgaaggcttggcgcatttggagcgtttggcgcgtgaacat
ttgccagcggatgcgatgattgactataaagggcaatcgcgagacttccaaacctccggt
aatgcgatttactttgtgctaatgctcggtttagtggtggtgtttttagtcttggcggcg
cagttcgaaagttttgttagtccgtttattattatgtttaccgtgcccttggcggtggcc
gggggcttattgggtttgtggtaccacggcttaacactcaacttgtacacgcaaatcggt
ttggtgatgctagtgggtttagccaccaaaaacggtattttaattgttgagtttgccaat
caattacgcgacaagggtcaggcttttaaggaggcattggttgaagccagttgtttacgt
ttgcgtccgattctgatgaccgcgattacaaccgtagtcggtgcgattccgctggtgatg
tcatcgggcgcgggcgcagaaacccgctatgtgattggggtggtgttaatttggggtgtc
accatcgccaccttctttacgctgtttgtgattccggtggtctatcaatggttgggacgt
ttcagccaacctgctggacataacaagcgacaacttgaacaagagttgggtgatttgcac
aaactttga
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