KEGG   Tuber melanosporum: GSTUM_00006126001
Entry
GSTUM_00006126001 CDS       T01282                                 
Name
(RefSeq) hypothetical protein
  KO
K12608  CCR4-NOT complex subunit CAF16
Organism
tml  Tuber melanosporum
Pathway
tml03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tml00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GSTUM_00006126001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tml03019]
    GSTUM_00006126001
Messenger RNA biogenesis [BR:tml03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     GSTUM_00006126001
SSDB
Motif
Pfam: ABC_tran AAA_21 SMC_N AAA_29 AAA_25 AAA_23 AAA_15 DUF3584 RsgA_GTPase ORC-CDC6-like DLIC AAA_22 PduV-EutP
Other DBs
NCBI-GeneID: 9183964
NCBI-ProteinID: XP_002838309
INRA: GSTUM_00006126001
UniProt: D5GDA7
LinkDB
AA seq 280 aa
MAHHPPSIDIQNLTYTFPDNSIGLEDININLPAGSRTLLIGANGAGKTTLLRLASGKKLT
TRGRIRIGGVDPFAHGLEGVTYLGLEWVLNPIVRNDIYVHELLASVGGDAYPERRDQLVR
ILDIDVDWRMHIASDGERRRVQLAMGLLRPWSILLIDEVTVDLDVLARFRFLEFLKEETE
TRGCTIVYATHIMDGIAGWPTNLVRMAGGKVKAVGTVASFLGEVERKGASAGCRDGGIMR
NSALLDLALGWLVEDLEERGPRDRTKSGQVTYNNVEKEPF
NT seq 843 nt   +upstreamnt  +downstreamnt
atggcccatcaccccccatcaatcgacatccaaaacctaacctacaccttccccgacaac
tccatcgggctagaagacataaacatcaacctcccagctggctcgcgcacgcttctcatc
ggcgcgaacggggccggcaagactacgctgctccgcctcgcctcgggcaaaaaactcaca
acccggggccgcatacgtatcggtggcgtggacccattcgcgcatgggctggagggcgtg
acctacctgggtctggaatgggttctgaacccgatcgtgcggaacgatatctacgtgcac
gagctcctggcgagcgtgggcggggacgcgtaccctgagcggcgcgatcagctggtgcgc
atcctggacatcgacgtcgactggcgaatgcacatagcttccgatggggaaaggcggagg
gtgcagttggcgatgggcttgctcaggccttggtccattctgctgatcgatgaggtcacc
gttgacttggacgtccttgcgcgctttaggtttttggagttcttgaaggaggagacggag
actcggggatgcaccatcgtctatgctacgcatatcatggatgggattgccgggtggcca
acgaatttggttaggatggcgggggggaaggttaaggcggttggcaccgtggcttcgttt
ttgggggaggttgagaggaagggggctagtgcggggtgccgcgatggagggattatgcgg
aattcggcattgttggatctggcgctgggctggttggtggaggatttggaggagaggggg
cccagggataggacgaagagtggccaggtgacatataataatgttgagaaggagcccttt
taa

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