Tuber melanosporum: GSTUM_00006126001
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Entry
GSTUM_00006126001 CDS
T01282
Name
(RefSeq) hypothetical protein
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
tml
Tuber melanosporum
Pathway
tml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSTUM_00006126001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tml03019
]
GSTUM_00006126001
Messenger RNA biogenesis [BR:
tml03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
GSTUM_00006126001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
AAA_21
SMC_N
AAA_29
AAA_25
AAA_23
AAA_15
DUF3584
RsgA_GTPase
ORC-CDC6-like
DLIC
AAA_22
PduV-EutP
Motif
Other DBs
NCBI-GeneID:
9183964
NCBI-ProteinID:
XP_002838309
INRA:
GSTUM_00006126001
UniProt:
D5GDA7
LinkDB
All DBs
AA seq
280 aa
AA seq
DB search
MAHHPPSIDIQNLTYTFPDNSIGLEDININLPAGSRTLLIGANGAGKTTLLRLASGKKLT
TRGRIRIGGVDPFAHGLEGVTYLGLEWVLNPIVRNDIYVHELLASVGGDAYPERRDQLVR
ILDIDVDWRMHIASDGERRRVQLAMGLLRPWSILLIDEVTVDLDVLARFRFLEFLKEETE
TRGCTIVYATHIMDGIAGWPTNLVRMAGGKVKAVGTVASFLGEVERKGASAGCRDGGIMR
NSALLDLALGWLVEDLEERGPRDRTKSGQVTYNNVEKEPF
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
atggcccatcaccccccatcaatcgacatccaaaacctaacctacaccttccccgacaac
tccatcgggctagaagacataaacatcaacctcccagctggctcgcgcacgcttctcatc
ggcgcgaacggggccggcaagactacgctgctccgcctcgcctcgggcaaaaaactcaca
acccggggccgcatacgtatcggtggcgtggacccattcgcgcatgggctggagggcgtg
acctacctgggtctggaatgggttctgaacccgatcgtgcggaacgatatctacgtgcac
gagctcctggcgagcgtgggcggggacgcgtaccctgagcggcgcgatcagctggtgcgc
atcctggacatcgacgtcgactggcgaatgcacatagcttccgatggggaaaggcggagg
gtgcagttggcgatgggcttgctcaggccttggtccattctgctgatcgatgaggtcacc
gttgacttggacgtccttgcgcgctttaggtttttggagttcttgaaggaggagacggag
actcggggatgcaccatcgtctatgctacgcatatcatggatgggattgccgggtggcca
acgaatttggttaggatggcgggggggaaggttaaggcggttggcaccgtggcttcgttt
ttgggggaggttgagaggaagggggctagtgcggggtgccgcgatggagggattatgcgg
aattcggcattgttggatctggcgctgggctggttggtggaggatttggaggagaggggg
cccagggataggacgaagagtggccaggtgacatataataatgttgagaaggagcccttt
taa
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integrated database retrieval system