Tuber melanosporum: GSTUM_00007703001
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Entry
GSTUM_00007703001 CDS
T01282
Name
(RefSeq) hypothetical protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
tml
Tuber melanosporum
Pathway
tml03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GSTUM_00007703001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tml03400
]
GSTUM_00007703001
Enzymes [BR:
tml01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GSTUM_00007703001
DNA repair and recombination proteins [BR:
tml03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
GSTUM_00007703001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
RNA_ligase
BRCT
LIG3_BRCT
YqbF_HeH
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
9185097
NCBI-ProteinID:
XP_002839652
INRA:
GSTUM_00007703001
UniProt:
D5GH50
LinkDB
All DBs
AA seq
991 aa
AA seq
DB search
MSDIDDIDLPDIPRAPVDPSGDTFGPNVILSDSDLDKAYPNRPRNKNPTLPFADLYLSLF
EPLLANKKKRTGVSIRGTNKVLKPHEIRRNIIDRFISRWRNEVGNDIYPTLRLILCEKDR
DRSVYHLKEKTIGRLLVKVMKINKDSDDGYSLINWKQPGTSKSAGDFALRCYEIIRKRPM
RTTPGSLTISQVNSMLDRLSLASKEEEQLPIMTEFYNNMNASELMWLIRIIMRQMKVGAT
ERTFFDAWHPDAAALFNISSSLKRVCWELSDPEFRMDSDGKSVSLMSCFQPQLAQFQKRS
LDDAVKAMHLTPEDPIFWIEEKLDGERMQMHYENGNFMFWSRKAKDYTRLYGSCFDDGSL
TRHLRGAFDDGVKSIILDGEMITWDPRLDCIVAFGTLKTAALEGIRNPFGDGPRPLFKVF
DILHLNGGCLINYSLRDRRMALERSVKTIDRRMEVHKYEEAREAVEIERALRKVIAEASE
GLVIKNPRSIYRLNDRNDDWMKVKPEYMTEFGESLDLVVLGGYWGSGTRGGILSSYLCGL
RVDGNHLKPGEDPMKFRSFCKVGGGFTANDYSKIAHMTDSQWVPWDPKKPPSEHIEIVAG
GRGVDQPDVWIRPDKSIVLEVKAASIVPTDEFRVGKSLRFPRFRQIREDKDWQTALSISE
LIALKEEVEKEKADEEKRIEVENRTRRAGKRMKREYTVLGASDKPADFVSPTVEGGPRLF
EGRSFYVMSDATTPKKMGKAEVEQLIKSHGGNLYQTENAVPDTNVIGDKNNVKISALKKK
GTHDVIRPAWIFDCIRQHELDLQRGQKGCYIIPIEARHILHAASGVERRAAASVDQFGDS
YARDLTMEEISNLLRDMPGAFDRTFASEFVKGLSEHDQRELGELPGWMFKTFVIYVDREG
QGEVNENLKPSPLLALFAGARIALDLQDTEITHIIASHDQQRLHELREAIKWRPRIPRIV
TRDWLKSSLEARTVLDEEQFSPALGCVTGSA
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatatcgatgatattgaccttccggatatcccaagggctcctgtggacccttct
ggtgatacgttcggtcccaacgtgattctcagcgactccgatcttgataaagcatacccg
aatcgacctagaaataagaaccctaccttaccttttgcggatctctacctctccctattt
gagcccctccttgcgaataagaagaagaggaccggagtgagcatccgtgggactaataaa
gtattaaagcctcatgagattcgcaggaatatcatcgaccgattcatctctcgctggcgt
aacgaagttggcaatgacatatatcctacccttaggttaatactctgcgaaaaggatagg
gatagaagtgtttatcacctcaaagaaaaaaccatcggcagactgttagtaaaggtcatg
aaaatcaataaagatagtgatgatggctactctctgattaactggaaacaacccggcaca
tccaagagcgctggtgattttgcgcttcgctgttatgagatcatcaggaaacggccaatg
cgtacaacccctggaagcctgacgatttctcaggtaaactctatgctagaccgtctctcg
ctggccagtaaagaggaggagcagcttccaataatgactgagttctacaacaacatgaat
gccagcgagctaatgtggttgattaggatcataatgagacaaatgaaagttggtgccacc
gaaagaaccttctttgatgcctggcaccccgatgccgctgctctcttcaatatatcatcg
tcactcaagcgtgtctgctgggaactctcggatcccgagttccgcatggactctgatggc
aagtcggtatctctaatgtcatgcttccaaccgcaactagctcagtttcagaaacgctcg
ttggacgacgccgtcaaggctatgcatcttactcctgaagaccccattttctggattgaa
gaaaagctagatggcgagcggatgcaaatgcattacgagaacggcaatttcatgttctgg
agtcgcaaagctaaagactacacgaggctttatggctcctgtttcgatgatgggagccta
acgagacaccttcgcggcgccttcgacgatggcgttaaaagcatcatcctggacggtgag
atgattacttgggacccaagattggactgtatagttgcctttggaacacttaaaaccgca
gcgcttgaagggatcaggaacccgtttggtgatggccctcggcctttattcaaggtattc
gatattcttcacctgaatggtggatgcctaatcaactattccctgcgggatagacgcatg
gcactcgagcgaagcgtcaaaactatagaccgtaggatggaggtccataaatacgaggag
gctcgagaggctgttgaaattgaaagagccctcagaaaggtcattgctgaggctagcgag
ggactggtaataaagaacccaaggagtatataccgtcttaacgaccgaaacgatgactgg
atgaaagtcaaaccggaatatatgacagagtttggcgaatcactcgacctagtcgtcttg
ggcggttattggggtagtggcacacgaggtggtatcctatcgagttatctctgcgggctg
cgtgtggacgggaaccatctcaagcctggggaagatccaatgaaattccgttccttctgt
aaagtcggtggtgggttcactgcaaatgactactctaaaatcgctcatatgaccgactcc
caatgggtcccttgggatcccaaaaaaccacccagcgaacacattgagattgtggcaggt
gggcgcggcgttgaccagcccgacgtctggatcagacccgataagtctatagtcctggag
gtcaaggcggctagcattgtcccaacagatgagtttcgggtaggcaaatccttgcggttt
cctcgattcaggcagatacgcgaggacaaggactggcaaaccgcacttagtatctcagag
ctcatcgcgctcaaggaggaggttgagaaggaaaaggcagatgaagagaaaagaatcgag
gttgagaaccgaacacggagagccgggaaacgcatgaaacgtgaatatactgttctcggg
gcaagtgataaacccgcggactttgtttcaccaacggttgagggtggtccacgactcttc
gaagggcgctcgttttatgtcatgtccgacgccacaactcccaaaaaaatgggtaaggct
gaggtcgaacaactcatcaagtctcacggtgggaatttatatcaaaccgagaacgcagtt
ccggatacaaatgttatcggagataagaacaatgtcaaaatatccgccctcaaaaagaaa
ggaactcacgatgtcattcgccccgcgtggattttcgactgtattcggcagcatgagcta
gacctacaacgtggtcagaaaggctgctacatcattcctattgaagcgaggcacatatta
cacgctgccagtggtgtagagagacgagcagccgctagcgtagaccaatttggtgatagc
tatgcccgagacctcaccatggaagaaataagtaacctcctccgagatatgcccggagcc
ttcgataggacttttgcgtcggagttcgttaagggccttagtgagcatgaccagcgggag
ctcggtgagctccctggctggatgttcaagacctttgttatctacgtcgacagggaaggt
caaggagaagttaacgaaaacctcaaaccatcaccactcctagccctatttgctggggct
cgtatcgctctcgacctccaagacacggaaataacacacatcatagcttcccacgaccaa
caacgactccacgaactcagggaagccataaaatggcgcccacgcatcccccgaatcgta
acaagagactggctgaaatctagcctagaagcaagaacggttttagacgaggagcagttc
tcgccggctctgggttgtgtgaccggctcggcctga
DBGET
integrated database retrieval system
