Tuber melanosporum: GSTUM_00010142001
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Entry
GSTUM_00010142001 CDS
T01282
Name
(RefSeq) hypothetical protein
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
tml
Tuber melanosporum
Pathway
tml03018
RNA degradation
tml03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tml00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GSTUM_00010142001
09123 Folding, sorting and degradation
03018 RNA degradation
GSTUM_00010142001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tml03019
]
GSTUM_00010142001
03041 Spliceosome [BR:
tml03041
]
GSTUM_00010142001
Messenger RNA biogenesis [BR:
tml03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
GSTUM_00010142001
mRNA degradation factors
5'-3' decay
Lsm complex
GSTUM_00010142001
Spliceosome [BR:
tml03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
GSTUM_00010142001
Complex C
U2 snRNP components
GSTUM_00010142001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
9186073
NCBI-ProteinID:
XP_002841138
INRA:
GSTUM_00010142001
UniProt:
D5GLD6
LinkDB
All DBs
AA seq
95 aa
AA seq
DB search
MSDADDTSPIQEPLDLVRLSLDEQVFVKLRGDRELRGRLHAYDSHCNLVLGDVEETIYTV
GDDEEDDSVKTIKKQSEMLFVRGDSVVLISPQAQS
NT seq
288 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacgccgacgataccagtccgatccaggagccccttgaccttgtccgcttatcc
cttgatgagcaggtattcgtcaaactacgcggagaccgggaattgagggggagattacat
gcttacgactcacattgcaaccttgtccttggagacgttgaagagacgatatatactgtt
ggcgatgatgaagaggatgatagtgttaagacaatcaaaaagcaatcggagatgttgttt
gttcgaggggactcggttgttctaatatcgccgcaggcgcagtcataa
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