Tistrella mobilis: TMO_c0230
Help
Entry
TMO_c0230 CDS
T02128
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tmo
Tistrella mobilis
Pathway
tmo03030
DNA replication
tmo03410
Base excision repair
tmo03420
Nucleotide excision repair
tmo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tmo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TMO_c0230 (ligA)
03410 Base excision repair
TMO_c0230 (ligA)
03420 Nucleotide excision repair
TMO_c0230 (ligA)
03430 Mismatch repair
TMO_c0230 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tmo03032
]
TMO_c0230 (ligA)
03400 DNA repair and recombination proteins [BR:
tmo03400
]
TMO_c0230 (ligA)
Enzymes [BR:
tmo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
TMO_c0230 (ligA)
DNA replication proteins [BR:
tmo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TMO_c0230 (ligA)
DNA repair and recombination proteins [BR:
tmo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
TMO_c0230 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TMO_c0230 (ligA)
MMR (mismatch excision repair)
DNA ligase
TMO_c0230 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TMO_c0230 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
AFK56840
UniProt:
I3TVQ2
LinkDB
All DBs
Position
pTM3:complement(244233..246344)
Genome browser
AA seq
703 aa
AA seq
DB search
MTDRNETVMQPTLEEARQSHRALVQRIRYHDRRYYKEDAPEISDADYDRLRADLIRLETL
YPELQTADSPTRTVGAAPAEGFAKVRHARPMLSLANAFEDEDVVEFLARARKGLNLKEDD
ELAVVAEPKIDGLSASLRYENRRLVVAATRGDGTEGEDVTRNMLTIDDVPDTLPDDAPDL
VEVRGEVYMGKADFATLNERRAEAGEALFANPRNAAAGSLRQLDPEITRKRPLKFFAYAW
GEVSAPLAPTQWAALDRLESFGFTVNPLRRLCRGADELLARYREIGDGRHALDYDIDGVV
YKIDRLDWQALLGQVARAPRWAIAHKFPAEQAKTRLLGIEIQVGRTGALTPVAHLEPVTV
GGVVVSRATLHNEDEIARKDIRIGDLVVVQRAGDVIPQVVEVVVAERPNDTRPFEAPAVC
PACGSHAVREPGEAVRRCTGGLICPAQAVERLKHFVSRDATDIEGLGRKEVEAFFEDGLI
RSPVDIYTLPRRQETGEIDLTKRAGWGRKSVDNLLAAIEARRRLPLDRFIFALGIRHVGQ
NTAKLLARNYRTFEAWRAGLEAAADPESPARADLDAIAGIGPVVAEALTDFMAEAHNREV
LEALIAEVEVIEADIPAQVSGSLSGKTLVFTGKLEKLTRDSAKRRAEQHGATVASSVSSA
TGILVAGAAAGSKLAKAREKGIEVWTEDEFLEATGGAAENGEG
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaccgcaacgagaccgtgatgcagcccacgctcgaagaggcgcgtcagagccac
agggccctggtccagcgcattcgctatcatgaccggcgctattacaaagaggacgcgccc
gagatcagcgatgccgattacgaccggctgcgcgccgatctgatccggctggagacgctt
tacccggaactccagacggcggacagccccacccggacggtgggcgcggccccggccgag
ggcttcgccaaggtccgccacgcccgtccgatgctctcgctcgccaatgcctttgaggac
gaggatgtggtcgagttcctggcccgggcgcgcaagggtctgaacctcaaggaagacgac
gagcttgcggtggtggcggagcccaagatcgacgggctttcggccagtctgcgctacgag
aaccgccggctggtggtggctgcgacccgcggtgacggcaccgagggcgaggacgtcacc
cgcaatatgctgaccatcgacgatgtgcccgacaccctgccggacgacgcccccgatctg
gtcgaagtgcgcggcgaggtctatatgggcaaggccgatttcgcgactctgaacgagcgc
cgggccgaggcgggcgaggcgctgttcgccaatccgcgcaatgccgccgctggatcgctg
cgtcagctggaccccgagatcacccgcaagcggccgctcaaattcttcgcctatgcctgg
ggcgaggtttcggcaccgctggcgccgacccagtgggcggcgctcgaccggctggagagc
ttcggcttcaccgtcaatccgctgcgccggctgtgccggggggcggacgagctgctggca
cgctatcgcgagatcggtgacggccgccacgcgctcgattacgacatcgacggcgtggtc
tacaagatcgaccggctggactggcaggcgctgctgggccaggtggcgcgggcgccgcgc
tgggcgatcgcccataaatttccggcggaacaggcgaagacccgcctgctcggcatcgag
atccaggtcggccgcacgggggcgctcaccccggtcgcgcatctggagccggtgacggtg
ggtggtgtggtcgtctcgcgcgcaaccctgcacaacgaggacgagatcgcgcgcaaggac
atccggatcggcgatctggtggtggtgcagcgcgccggcgacgtcatcccgcaggtggtc
gaggtggtggtggccgaacggccgaacgacacccggcccttcgaggcgccggcggtctgc
ccggcctgcggctcgcatgcggtgcgcgagccgggagaggcggtgcggcgctgcaccggc
gggctgatctgcccggcccaggcggtggagcggctgaagcacttcgtctcccgcgatgcc
accgatatcgaagggctgggccgcaaggaggtcgaagccttcttcgaggacgggctgatc
cgcagcccggtcgacatctacaccctgccgcggcgccaggaaaccggcgagatcgacctc
acgaagcgggccggctggggccgcaaatcggtcgacaacctgctggcggcgatcgaggca
cggcggcggctgccgctcgaccgcttcatcttcgccctgggcatccgccatgtcggccag
aacacggcgaagctgctggcgcgcaactaccgcactttcgaggcctggcgcgccgggctc
gaagccgccgccgatccggaaagcccggcgcgggcggatctggatgcgattgcaggcatc
ggcccggtggttgccgaggcgctgaccgatttcatggccgaggcgcataaccgcgaggtg
ctggaggccctgatcgccgaggtggaggtgatcgaggccgacatcccggcgcaggtctcg
ggcagcctgtcgggcaagaccctggtcttcaccggcaagcttgagaagctgacccgcgat
tccgccaagcgccgggccgagcagcatggcgccaccgtggcaagctcggtctcgtcagcc
accggcatcctggttgccggcgcggcggcgggttccaagctcgccaaggcgcgcgagaag
ggcatcgaggtctggaccgaggacgagttcctcgaagcgaccggcggcgcggcggagaat
ggcgaaggctga
DBGET
integrated database retrieval system
